Glyma13g09495 - SoyBase

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Report for Sequence Feature Glyma13g09495

Feature Type:	gene_model
Chromosome:	Gm13
Start:	10905243
stop:	10924253
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g09495

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77250	AT	Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD-type zinc finger family protein \| chr1:29020444-29022938 REVERSE LENGTH=522	SoyBase	E_val: 1.00E-106	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR10615	Panther	MYST-RELATED PROTEINS	JGI		ISS
PTHR10615:SF70	Panther	MBD9 (METHYL-CPG-BINDING DOMAIN 9), DNA BINDING	JGI		ISS
PF00628	PFAM	PHD-finger	JGI		ISS
UniRef100_B9S2S4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S2S4_RICCO	SoyBase	E_val: 2.00E-134	ISS
UniRef100_UPI0002339477	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339477 related cluster n=1 Tax=unknown RepID=UPI0002339477	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g09495

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g09495 not represented in the dataset	Glyma13g09495 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g09495

Paralog	Evidence	Comments
Glyma14g24986	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g09495 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g035400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g09495

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g09495

Limit To All Plant Sequences

>Glyma13g09495.1   sequence type=CDS   gene model=Glyma13g09495   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCTGAGGAGGGAAGTAGCAACGGTGATAACGGTGAAGGGGTTGGGTTGGATTGGAGGTTGGGTTCTCAAGATGGAGATAATGGGGGGAGAATTTTAGGTGGAAATGGTGTTGCGGAGGGCGAAGGAGATCGGGGCTTGAAAGATGGAGCTGTAAATAATGGGGTGGCAATTGAAGCTGAAGAAGTTTGGGGTCTGAAGAAGGAAGCTGTAGATAATGGGGTGGCAGTTGTAGGAGGAGATGGTGTTGTAGAAGGTGAAGAAGTTCGGGGCTTGAAGAATGTAACTGTAAATAATGGGATGGCAATTGAGGGTGGAAATGGTGTTGCTGAAGGCAAAGTTTGGGCCTTGAAGAATGAAGTTATAAATAGTGGAGTGGCAATTGCTGATGGGAATGGTGCTGCTGAAGATGGAGAGGTTTCAGGCTCAAAGAATGATGTTATCGGGGTGGCAATTGCTGATGGGAATGGTTTTGCTGAACATGGAGAAGTTTGGGGATCAAAGAATGAAGCTGTAAGTAATGAGGTGCCATTTGTTGATGGGAATTGTGTTGTTTACAGTGGAGAAGTTCAGGGCTCTAAGAATGGAGCTGTAAATAATGAGGTGGTAATTGCAGATGAGATTGGTGTTACTGAAGGTCAAGAGGATCACTGCTTGCAGAATGGAACTGTGGATAATGTAGTGGCAAATGCAAATGAAGGGAACTCTGGTTCAGTTGAATGTTTTCAAACATATAAGAGGCGCAAGCATGTAAAGTTGAGTTCAGAATTTGAAGTCCAGGAGAACAGCAGAAAACATATGGCAGCTGCAAGTCAACTGTCAGAACAGGCAGTGAAGAAACCATTTGATTTAGCTGTAGGCAACACTTCAAAAGATCATTCACATGACCATTGGGGGAATGTTGTACTAAAGCAATTATATCATTCATTAGGCAATGATAATGGTGGCATGGAGTGGTGTATAAGGGAAGCACTCATGAGCCATCCTAAAATTAGTTGTGCCACTACAATGACGGAAACTCTTAATATTGTCAAGGATGGTCAGGAGTGCTCTCCGCAATTAGAAAGTTTGTTTTATAGATTACAGAGTGAAGCTAATGGACATGAAAATGTTGTGAACAATGGATTTTCTAGTGAGTCAAATGGCCATGGTGCAACTGGCAGGTGTCAGCGTGTGTTCCGTGATATCTTAGCCTCTGAGAAGTTCAGTTCATTATGTAAAGTGCTACTTGAAAATTTCCGAGGAATGAAACCTGAAACTGTATTTGACTTTAGTTTGATAAACTCAAGGATGAAAGGGCAAGCTTATGAACAATCCCCTACACTTTTCTTATCAGATTTTCAACAGGTTTGGCGAAAGCTTCAAAATACTGGAAATCAGATTGTTGCTATGGCCAGGAGCCTCTCCAACATGTCAAAAGCTTCCTTCTGTGAGCAGGTGGGAATTTCAGCGCAGAGTTCCTTTGAAGATGAAAAACAAGTGCTCTGTAACCAGGAATCCATCTCTCACATGAAACCAGAGCAGACAGTAGAATGTGTTGCATTCAAAGTTGGCAACTGTTGGCATTGTGGAGACAAAGCAGATGGGATAGACTGTTTGGTTTGTGATTCATGTGAGGAGATGTATCATCTGTCCTGTATTGAGCCTGCCGTGAAGGAAATACCCCGCAAAAGCTGGTTCTGTGCCAATTGTACTGCTAATGGAATTGGATGTCGACACAAGAATTGTGTGGTGTGTGAACAGTTGAATGTCCTGAAGACCCTGGATGACTTTGTTGGTGAGGAAAACTTCCCTACAAATGAGGAAACACTAAATGAATTGGAAGAGTATTCAAATTGTACTTATGATGGGATTCAAGTTTCCACAGATGGGAGAAACTCATCAAACTGCAAAATTTGTAAAATGGCGGTGGATGGTGAAAAAGTAAAAATCTGTGGTCACTCTTTTTGCCCTAGTAAATACTACCATGTAAGGTGTTTGTCAAGTAAGCAGCTAAAGTCATATGGTAACTGTTGGTATTGCCCTTCTTGTATATGCCAAGTTTGCCTCACTGACAAAGATGATGATAAGATTGTACTCTGTGATGGCTGTGATCATGCATACCACATCTACTGTATGAAACCTCCACAAAATTCTATTCCGAAAGGGAAATGGTTCTGCATAAAATGCGAGGCAGGGATACAGGCAATACGCCAGGCAAGAAAGGCATATGAGAGTAAAAAAGGCAAAGTTGGTCAGAATGATTCAAAGCCAAATGAAGATATTGACAAGAAATGGAACAAAAAGCGAGGACGGGAATCAGACAAAGTTGGTGGAATGATGGACATGCTTATAAATGCTGCAAATACTCTGAATTCTGAAGAGGACATGAATGCAATGCTGATTGACTCAAAGAAAACATTAACATGA

Predicted protein sequences of Glyma13g09495

Limit To All Plant Sequences

>Glyma13g09495.1   sequence type=predicted peptide   gene model=Glyma13g09495   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAEEGSSNGDNGEGVGLDWRLGSQDGDNGGRILGGNGVAEGEGDRGLKDGAVNNGVAIEAEEVWGLKKEAVDNGVAVVGGDGVVEGEEVRGLKNVTVNNGMAIEGGNGVAEGKVWALKNEVINSGVAIADGNGAAEDGEVSGSKNDVIGVAIADGNGFAEHGEVWGSKNEAVSNEVPFVDGNCVVYSGEVQGSKNGAVNNEVVIADEIGVTEGQEDHCLQNGTVDNVVANANEGNSGSVECFQTYKRRKHVKLSSEFEVQENSRKHMAAASQLSEQAVKKPFDLAVGNTSKDHSHDHWGNVVLKQLYHSLGNDNGGMEWCIREALMSHPKISCATTMTETLNIVKDGQECSPQLESLFYRLQSEANGHENVVNNGFSSESNGHGATGRCQRVFRDILASEKFSSLCKVLLENFRGMKPETVFDFSLINSRMKGQAYEQSPTLFLSDFQQVWRKLQNTGNQIVAMARSLSNMSKASFCEQVGISAQSSFEDEKQVLCNQESISHMKPEQTVECVAFKVGNCWHCGDKADGIDCLVCDSCEEMYHLSCIEPAVKEIPRKSWFCANCTANGIGCRHKNCVVCEQLNVLKTLDDFVGEENFPTNEETLNELEEYSNCTYDGIQVSTDGRNSSNCKICKMAVDGEKVKICGHSFCPSKYYHVRCLSSKQLKSYGNCWYCPSCICQVCLTDKDDDKIVLCDGCDHAYHIYCMKPPQNSIPKGKWFCIKCEAGIQAIRQARKAYESKKGKVGQNDSKPNEDIDKKWNKKRGRESDKVGGMMDMLINAANTLNSEEDMNAMLIDSKKTLT*

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