Report for Sequence Feature Glyma13g09390
Feature Type: gene_model
Chromosome: Gm13
Start: 10675359
stop: 10683494
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g09390
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G21380 AT
Annotation by Michelle Graham. TAIR10: Target of Myb protein 1 | chr1:7485806-7488032 REVERSE LENGTH=506
SoyBase E_val: 2.00E-171 ISS
GO:0006886 GO-bp
Annotation by Michelle Graham. GO Biological Process: intracellular protein transport
SoyBase N/A ISS
GO:0006891 GO-bp
Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0005795 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi stack
SoyBase N/A ISS
GO:0008565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein transporter activity
SoyBase N/A ISS
KOG1087
KOG
Cytosolic sorting protein GGA2/TOM1
JGI ISS
PTHR13856 Panther
VHS DOMAIN CONTAINING PROTEIN FAMILY
JGI ISS
PTHR13856:SF3 Panther
TARGET OF MYB1
JGI ISS
PF00790 PFAM
VHS domain
JGI ISS
PF03127 PFAM
GAT domain
JGI ISS
UniRef100_B9S2Q1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein transporter, putative n=1 Tax=Ricinus communis RepID=B9S2Q1_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1LXC2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXC2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g09390
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma13g09390 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g036000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g09390
Transcripts of Glyma13g09390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g09390.2 sequence type=transcript gene model=Glyma13g09390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTTTGAAGAAAAGTTCAATATGAAAGGATACATAAAAAAAAGTGAAGCAAACCACACCTGACAAGTGACGCCAACAATCCCCATTGCCCAATCCCGAAGCTGCGGCTTCCTCATTCTTGCATCACATATCCCAATCGCTTCTGATTCGAATTCCATTTCAATTTCGATTCGACGGGTTTTTCATTTGATAATTGAAGAGAAGGTTTGAATTGAGATTGAGGAGTTTATTTGAGGGAGAGGGAAATGGCTAACAATGCAGCAGCCTGTGCTGAGAGAGCAACTAGTGACATGCTGATTGGTCCAGACTGGGCAATTAACATAGAGTTGTGTGATATAATTAATATGGACCCTAGGCAAGCAAAGGATGCAATAAAGATACTTAAGAAGCGTTTGAGCAGTAAAAATCCCCAAATACAACTTTTGGCTCTTTTTCCAGACTTACGTGTGAGGGAAAAGATATTGATTTTGATTGATACATGGCAAGAAGCTTTTGGAGGACCAAGTGGAAAATATCCACAGTACCTTGCAGCATATAATGAATTAAAGTCTGCTGGAGTTGAATTTCCCCCACGAGAAGAGAATAGTGCTCCTTTCTTCACTCCTCCCCAAACCCTGCCAGTTCATCTTGCTGCTGCAGAATATGATGATGCTTCTATTCAGGCTTCTCTTCATTCAGATGCATCTGGCCTTAGTTTGCCAGAGATCCAGAATGCTCAAGGGCTGGCAGATGTATTGACTGAAATGGTTAATGCCTTGGATCCTAAAAATCCTGAGGTTGAGAACCAGGAGGTGATTGCTGAACTTGTTGACCAGTGTCGCTCATACCAAAAGCGTGTTATGCTTCTTGTAAATGAGACTTCGGATGAGCAGCTTTTAGGTCAGGGATTGGCACTGAATGACAGTCTTCAGCGAGTGCTTTGTCAACATGACAATATTGTAAAAGGAACTCCAGATACAGGCACAAGAGGAACAGAAACGTCAACTCTGCCACTTGTATATGTAACCAATGAAGAGGATGAGTCAGACGTTGATTTTGCCCAACTAGCCCATAGGTCCTCACGAGATACGAATGCACAGAGAGCCAATGCCAAGGCAGAACCCGTGAGAGTAAACCCAATTCTTCCTCCACCACCAGCACCAAAGAAACCAATCTTCACAGATGCTGGTATGATTGACTATCTCAGTGGTGATGCATACAAAACAGAAGCATCCCATGAACAATCTGAACCAACTTCATATGCCGTGCCCCTTCATTCTAGTCCTACTAATCCTGCCTCAACCGCTGCAACACTATCTTCCTCTCCACCTTATTCCCCAAGTACTCCATCGCGAATTTTAAGCAAACAGCCTGTGTATGATGAACCACCTCCCATCAATAAATCCTCAGAAAGCCTTCCTCTATCTCCCTTGGAAACACAATCTCCAGGCTTCCTTCTGCCGCCCCCTTCAAGCTATAATCAGAGACAGCAGTTTTTTGAGCAACAAGGTGTTCCTCATTCAAGTTCTGGGTTCAGTTCCGCAGATGACAGCTTGTTGGCACAAACCCAGAATTTGTCTCTGAATTCATCTACTCCAACCAAACAAGAGAAGACAGAAGATGTCCTTTTTAAAGATCTAGTTGACTTTGCAAAATCTAAAACCTCATCCTCTTCCAAACCCAGTAGGCCATTTTGAGAGATTTGGTTTGTATTGCTTACGGTGGTGCAGCTTATGAATGTTTTTCATCAGGTTTTGCTTCTGGTCACTGAGACGACTCATTTTATGGTGGTCTTCAATAATATTCGATTATGGTTTGTCCATGCATGTACCTGGTTTAATCAATACGTTGCTGCATATATTCATGTATATTGCTCATATTGAATGTTTGCTCGATTTTTCAATAATATTGGATTGCATCAGAATTTCTTTTCCATTTTTT
Coding sequences of Glyma13g09390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g09390.1 sequence type=CDS gene model=Glyma13g09390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTAACAATGCAGCAGCCTGTGCTGAGAGAGCAACTAGTGACATGCTGATTGGTCCAGACTGGGCAATTAACATAGAGTTGTGTGATATAATTAATATGGACCCTAGGCAAGCAAAGGATGCAATAAAGATACTTAAGAAGCGTTTGAGCAGTAAAAATCCCCAAATACAACTTTTGGCTCTTTTTGCACTGGAAACCCTTAGTAAAAATTGTGGTGACAGTGTATTTCAGCAGATCATTGAACAGGATATCTTACATGAAATGGTTAAAATAGTGAAGAAGCCAGACTTACGTGTGAGGGAAAAGATATTGATTTTGATTGATACATGGCAAGAAGCTTTTGGAGGACCAAGTGGAAAATATCCACAGTACCTTGCAGCATATAATGAATTAAAGTCTGCTGGAGTTGAATTTCCCCCACGAGAAGAGAATAGTGCTCCTTTCTTCACTCCTCCCCAAACCCTGCCAGTTCATCTTGCTGCTGCAGAATATGATGATGCTTCTATTCAGGCTTCTCTTCATTCAGATGCATCTGGCCTTAGTTTGCCAGAGATCCAGAATGCTCAAGGGCTGGCAGATGTATTGACTGAAATGGTTAATGCCTTGGATCCTAAAAATCCTGAGGTTGAGAACCAGGAGGTGATTGCTGAACTTGTTGACCAGTGTCGCTCATACCAAAAGCGTGTTATGCTTCTTGTAAATGAGACTTCGGATGAGCAGCTTTTAGGTCAGGGATTGGCACTGAATGACAGTCTTCAGCGAGTGCTTTGTCAACATGACAATATTGTAAAAGGAACTCCAGATACAGGCACAAGAGGAACAGAAACGTCAACTCTGCCACTTGTATATGTAACCAATGAAGAGGATGAGTCAGACGTTGATTTTGCCCAACTAGCCCATAGGTCCTCACGAGATACGAATGCACAGAGAGCCAATGCCAAGGCAGAACCCGTGAGAGTAAACCCAATTCTTCCTCCACCACCAGCACCAAAGAAACCAATCTTCACAGATGCTGGTATGATTGACTATCTCAGTGGTGATGCATACAAAACAGAAGCATCCCATGAACAATCTGAACCAACTTCATATGCCGTGCCCCTTCATTCTAGTCCTACTAATCCTGCCTCAACCGCTGCAACACTATCTTCCTCTCCACCTTATTCCCCAAGTACTCCATCGCGAATTTTAAGCAAACAGCCTGTGTATGATGAACCACCTCCCATCAATAAATCCTCAGAAAGCCTTCCTCTATCTCCCTTGGAAACACAATCTCCAGGCTTCCTTCTGCCGCCCCCTTCAAGCTATAATCAGAGACAGCAGTTTTTTGAGCAACAAGGTGTTCCTCATTCAAGTTCTGGGTTCAGTTCCGCAGATGACAGCTTGTTGGCACAAACCCAGAATTTGTCTCTGAATTCATCTACTCCAACCAAACAAGAGAAGACAGAAGATGTCCTTTTTAAAGATCTAGTTGACTTTGCAAAATCTAAAACCTCATCCTCTTCCAAACCCAGTAGGCCATTTTGA
>Glyma13g09390.2 sequence type=CDS gene model=Glyma13g09390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTAACAATGCAGCAGCCTGTGCTGAGAGAGCAACTAGTGACATGCTGATTGGTCCAGACTGGGCAATTAACATAGAGTTGTGTGATATAATTAATATGGACCCTAGGCAAGCAAAGGATGCAATAAAGATACTTAAGAAGCGTTTGAGCAGTAAAAATCCCCAAATACAACTTTTGGCTCTTTTTCCAGACTTACGTGTGAGGGAAAAGATATTGATTTTGATTGATACATGGCAAGAAGCTTTTGGAGGACCAAGTGGAAAATATCCACAGTACCTTGCAGCATATAATGAATTAAAGTCTGCTGGAGTTGAATTTCCCCCACGAGAAGAGAATAGTGCTCCTTTCTTCACTCCTCCCCAAACCCTGCCAGTTCATCTTGCTGCTGCAGAATATGATGATGCTTCTATTCAGGCTTCTCTTCATTCAGATGCATCTGGCCTTAGTTTGCCAGAGATCCAGAATGCTCAAGGGCTGGCAGATGTATTGACTGAAATGGTTAATGCCTTGGATCCTAAAAATCCTGAGGTTGAGAACCAGGAGGTGATTGCTGAACTTGTTGACCAGTGTCGCTCATACCAAAAGCGTGTTATGCTTCTTGTAAATGAGACTTCGGATGAGCAGCTTTTAGGTCAGGGATTGGCACTGAATGACAGTCTTCAGCGAGTGCTTTGTCAACATGACAATATTGTAAAAGGAACTCCAGATACAGGCACAAGAGGAACAGAAACGTCAACTCTGCCACTTGTATATGTAACCAATGAAGAGGATGAGTCAGACGTTGATTTTGCCCAACTAGCCCATAGGTCCTCACGAGATACGAATGCACAGAGAGCCAATGCCAAGGCAGAACCCGTGAGAGTAAACCCAATTCTTCCTCCACCACCAGCACCAAAGAAACCAATCTTCACAGATGCTGGTATGATTGACTATCTCAGTGGTGATGCATACAAAACAGAAGCATCCCATGAACAATCTGAACCAACTTCATATGCCGTGCCCCTTCATTCTAGTCCTACTAATCCTGCCTCAACCGCTGCAACACTATCTTCCTCTCCACCTTATTCCCCAAGTACTCCATCGCGAATTTTAAGCAAACAGCCTGTGTATGATGAACCACCTCCCATCAATAAATCCTCAGAAAGCCTTCCTCTATCTCCCTTGGAAACACAATCTCCAGGCTTCCTTCTGCCGCCCCCTTCAAGCTATAATCAGAGACAGCAGTTTTTTGAGCAACAAGGTGTTCCTCATTCAAGTTCTGGGTTCAGTTCCGCAGATGACAGCTTGTTGGCACAAACCCAGAATTTGTCTCTGAATTCATCTACTCCAACCAAACAAGAGAAGACAGAAGATGTCCTTTTTAAAGATCTAGTTGACTTTGCAAAATCTAAAACCTCATCCTCTTCCAAACCCAGTAGGCCATTTTGA
Predicted protein sequences of Glyma13g09390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g09390.1 sequence type=predicted peptide gene model=Glyma13g09390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MANNAAACAERATSDMLIGPDWAINIELCDIINMDPRQAKDAIKILKKRLSSKNPQIQLLALFALETLSKNCGDSVFQQIIEQDILHEMVKIVKKPDLRVREKILILIDTWQEAFGGPSGKYPQYLAAYNELKSAGVEFPPREENSAPFFTPPQTLPVHLAAAEYDDASIQASLHSDASGLSLPEIQNAQGLADVLTEMVNALDPKNPEVENQEVIAELVDQCRSYQKRVMLLVNETSDEQLLGQGLALNDSLQRVLCQHDNIVKGTPDTGTRGTETSTLPLVYVTNEEDESDVDFAQLAHRSSRDTNAQRANAKAEPVRVNPILPPPPAPKKPIFTDAGMIDYLSGDAYKTEASHEQSEPTSYAVPLHSSPTNPASTAATLSSSPPYSPSTPSRILSKQPVYDEPPPINKSSESLPLSPLETQSPGFLLPPPSSYNQRQQFFEQQGVPHSSSGFSSADDSLLAQTQNLSLNSSTPTKQEKTEDVLFKDLVDFAKSKTSSSSKPSRPF*
>Glyma13g09390.2 sequence type=predicted peptide gene model=Glyma13g09390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MANNAAACAERATSDMLIGPDWAINIELCDIINMDPRQAKDAIKILKKRLSSKNPQIQLLALFPDLRVREKILILIDTWQEAFGGPSGKYPQYLAAYNELKSAGVEFPPREENSAPFFTPPQTLPVHLAAAEYDDASIQASLHSDASGLSLPEIQNAQGLADVLTEMVNALDPKNPEVENQEVIAELVDQCRSYQKRVMLLVNETSDEQLLGQGLALNDSLQRVLCQHDNIVKGTPDTGTRGTETSTLPLVYVTNEEDESDVDFAQLAHRSSRDTNAQRANAKAEPVRVNPILPPPPAPKKPIFTDAGMIDYLSGDAYKTEASHEQSEPTSYAVPLHSSPTNPASTAATLSSSPPYSPSTPSRILSKQPVYDEPPPINKSSESLPLSPLETQSPGFLLPPPSSYNQRQQFFEQQGVPHSSSGFSSADDSLLAQTQNLSLNSSTPTKQEKTEDVLFKDLVDFAKSKTSSSSKPSRPF*