Glyma13g09290 - SoyBase

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Report for Sequence Feature Glyma13g09290

Feature Type:	gene_model
Chromosome:	Gm13
Start:	10416816
stop:	10421136
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g09290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77000	AT	Annotation by Michelle Graham. TAIR10: RNI-like superfamily protein \| chr1:28940888-28942401 FORWARD LENGTH=360	SoyBase	E_val: 0	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0010286	GO-bp	Annotation by Michelle Graham. GO Biological Process: heat acclimation	SoyBase	N/A	ISS
GO:0051603	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis involved in cellular protein catabolic process	SoyBase	N/A	ISS
GO:1901332	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of lateral root development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
PTHR23125	Panther	F-BOX/LEUCINE RICH REPEAT PROTEIN	JGI		ISS
PTHR23125:SF104	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00646	PFAM	F-box domain	JGI		ISS
UniRef100_B9S2N9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box/LRR-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9S2N9_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LXB5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXB5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g09290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g09290

Paralog	Evidence	Comments
Glyma14g26660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g09290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g036600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g09290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g09290

Limit To All Plant Sequences

>Glyma13g09290.4   sequence type=transcript   gene model=Glyma13g09290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCTAGCTGAGAAGCGAAAACCCATTATTCTTGTTATTAACAGAGTCACAAAGAATCAAACTTTTCTGTTCTCTATAGTAACGTTCTGTAATGGTTGGCAAGGAGAGTTTGAGAACTCATGAGGTCTTGAACTTTAGCTTTGAGAAGCTTATGATGGTTGACTGTGGTGGAAATAGTGGGAAAGGAGTGAACTTTAAAGCGGGGGTGATCACAGAATGGAAGGATATTCCAGTTGAGCTTTTGATGCAGATTTTGTCACTTGTGGATGATCAAACGGTTATGATAGCTTCTGAAGTTTGTCGTGGGTGGAGAGAGGCAATTTGCTTTGGCCTGACTCGGTTATCACTCTCATGGTGTAGCAAGAACATGAATAATTTGGTCCTATCCCTAGCTCCTAAATTCACAAAATTACAGACTTTAATCCTTCGTCAAGACAAGCCTCAACTAGAGGACAATGCTGTTGAAACTATTTCAAATTTTTGTCATGACCTCCAAATCTTGGACCTCAGCAAAAGTTTCAAGCTTACCGATCATTCGTTGTATGCCATAGCCCTTGGTTGTCAGGATCTTACAAAACTGAACATCAGTGGTTGTTCAGCCTTTAGTGACAATGCTCTGGCTTACCTGGCCAGTTTTTGTAGAAAGCTGAAAGTTTTGAATCTCTGTGGATGTGTTAAAGCTGCATCTGATACTGCGTTACAGGCAATTGGGCATTACTGCAATCAGTTACAGTTTTTGAACCTTGGATGGTGTGAAAATGTCAGCGATGTTGGAGTGATGAGTTTAGCATATGGCTGCCGTGATCTTAGAACACTCGATTTATGTGGTTGTGTCCTTATAACAGATGACAGTGTAATTGCCTTGGCAAACAGATGTCCTCATCTGAGGTCCCTTGGACTTTACTTCTGCCAAAACATCACAGACAGGGCAATGTATTCCTTGGCACAAAGCAAAGTGAACAACAGGATGTGGGGTTCTATGAAAGGTGGTGGAAATAATGATGATAATGATGATGGACTAAGAACTTTGAACATTAGCCAATGCACAGCACTCACCCCTTCTGCTGTGCAAGCTGTGTGTGACTCATGCCCTTCCCTCCACACCTGTTCTGGAAGACACTCACTCATCATGAGTGGTTGTCTGAATCTGACTTCTGTGCATTGTGCTTGTGCTGGCCAAGCACACCGTGCTTTCACTCTCCCACATGCAGCTCATTGAGCTAAGGGGTTGGCAAGGTTTTAAATATCAGTCGTGGTCGCGTTGTGATTTCGTCACAATCGTGGACAAGTGCGGCCAATATGGTTCCAATTGCAGTTGCATGGCAGTCGCATACAGGTAAAAAATCTTGATGTTGCAGACGGATATTTAAAACCTTGGGGGTTGGTGATGCATAAAGACACTTTGAGGAAGTTCCCTTGAAGGGTTTGATAGTTTTAGGTGTCTTGTTGATAAGTTTAAGTTGAATGCTGCATCATGTCATGTTGATTCTAGAACAGCTTGAGCTTGGTGCTTGAGTTTTCTTTTGGTCTCTGACTTTCATGTGAAGGGTCAGAATATTTTGGATGTAAAAATGGCTCTGAATTTATTTTGTGACATGGACTTTTATATAATGGGATGTTTATGCAAGGATGTGTGTTTTTTCTTATGG

Coding sequences of Glyma13g09290

Limit To All Plant Sequences

>Glyma13g09290.3   sequence type=CDS   gene model=Glyma13g09290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGGCAAGGAGAGTTTGAGAACTCATGAGGTCTTGAACTTTAGCTTTGAGAAGCTTATGATGGTTGACTGTGGTGGAAATAGTGGGAAAGGAGTGAACTTTAAAGCGGGGGTGATCACAGAATGGAAGGATATTCCAGTTGAGCTTTTGATGCAGATTTTGTCACTTGTGGATGATCAAACGGTTATGATAGCTTCTGAAGTTTGTCGTGGGTGGAGAGAGGCAATTTGCTTTGGCCTGACTCGGTTATCACTCTCATGGTGTAGCAAGAACATGAATAATTTGGTCCTATCCCTAGCTCCTAAATTCACAAAATTACAGACTTTAATCCTTCGTCAAGACAAGCCTCAACTAGAGGACAATGCTGTTGAAACTATTTCAAATTTTTGTCATGACCTCCAAATCTTGGACCTCAGCAAAAGTTTCAAGCTTACCGATCATTCGTTGTATGCCATAGCCCTTGGTTGTCAGGATCTTACAAAACTGAACATCAGTGGTTGTTCAGCCTTTAGTGACAATGCTCTGGCTTACCTGGCCAGTTTTTGTAGAAAGCTGAAAGTTTTGAATCTCTGTGGATGTGTTAAAGCTGCATCTGATACTGCGTTACAGGCAATTGGGCATTACTGCAATCAGTTACAGTTTTTGAACCTTGGATGGTGTGAAAATGTCAGCGATGTTGGAGTGATGAGTTTAGCATATGGCTGCCGTGATCTTAGAACACTCGATTTATGTGGTTGTGTCCTTATAACAGATGACAGTGTAATTGCCTTGGCAAACAGATGTCCTCATCTGAGGTCCCTTGGACTTTACTTCTGCCAAAACATCACAGACAGGGCAATGTATTCCTTGGCACAAAGCAAAGTGAACAACAGGATGTGGGGTTCTATGAAAGGTGGTGGAAATAATGATGATAATGATGATGGACTAAGAACTTTGAACATTAGCCAATGCACAGCACTCACCCCTTCTGCTGTGCAAGCTGTGTGTGACTCATGCCCTTCCCTCCACACCTGTTCTGGAAGACACTCACTCATCATGAGTGGTTGTCTGAATCTGACTTCTGTGCATTGTGCTTGTGCTGGCCAAGCACACCGTGCTTTCACTCTCCCACATGCAGCTCATTGA

>Glyma13g09290.4   sequence type=CDS   gene model=Glyma13g09290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGGCAAGGAGAGTTTGAGAACTCATGAGGTCTTGAACTTTAGCTTTGAGAAGCTTATGATGGTTGACTGTGGTGGAAATAGTGGGAAAGGAGTGAACTTTAAAGCGGGGGTGATCACAGAATGGAAGGATATTCCAGTTGAGCTTTTGATGCAGATTTTGTCACTTGTGGATGATCAAACGGTTATGATAGCTTCTGAAGTTTGTCGTGGGTGGAGAGAGGCAATTTGCTTTGGCCTGACTCGGTTATCACTCTCATGGTGTAGCAAGAACATGAATAATTTGGTCCTATCCCTAGCTCCTAAATTCACAAAATTACAGACTTTAATCCTTCGTCAAGACAAGCCTCAACTAGAGGACAATGCTGTTGAAACTATTTCAAATTTTTGTCATGACCTCCAAATCTTGGACCTCAGCAAAAGTTTCAAGCTTACCGATCATTCGTTGTATGCCATAGCCCTTGGTTGTCAGGATCTTACAAAACTGAACATCAGTGGTTGTTCAGCCTTTAGTGACAATGCTCTGGCTTACCTGGCCAGTTTTTGTAGAAAGCTGAAAGTTTTGAATCTCTGTGGATGTGTTAAAGCTGCATCTGATACTGCGTTACAGGCAATTGGGCATTACTGCAATCAGTTACAGTTTTTGAACCTTGGATGGTGTGAAAATGTCAGCGATGTTGGAGTGATGAGTTTAGCATATGGCTGCCGTGATCTTAGAACACTCGATTTATGTGGTTGTGTCCTTATAACAGATGACAGTGTAATTGCCTTGGCAAACAGATGTCCTCATCTGAGGTCCCTTGGACTTTACTTCTGCCAAAACATCACAGACAGGGCAATGTATTCCTTGGCACAAAGCAAAGTGAACAACAGGATGTGGGGTTCTATGAAAGGTGGTGGAAATAATGATGATAATGATGATGGACTAAGAACTTTGAACATTAGCCAATGCACAGCACTCACCCCTTCTGCTGTGCAAGCTGTGTGTGACTCATGCCCTTCCCTCCACACCTGTTCTGGAAGACACTCACTCATCATGAGTGGTTGTCTGAATCTGACTTCTGTGCATTGTGCTTGTGCTGGCCAAGCACACCGTGCTTTCACTCTCCCACATGCAGCTCATTGA

Predicted protein sequences of Glyma13g09290

Limit To All Plant Sequences

>Glyma13g09290.3   sequence type=predicted peptide   gene model=Glyma13g09290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGKESLRTHEVLNFSFEKLMMVDCGGNSGKGVNFKAGVITEWKDIPVELLMQILSLVDDQTVMIASEVCRGWREAICFGLTRLSLSWCSKNMNNLVLSLAPKFTKLQTLILRQDKPQLEDNAVETISNFCHDLQILDLSKSFKLTDHSLYAIALGCQDLTKLNISGCSAFSDNALAYLASFCRKLKVLNLCGCVKAASDTALQAIGHYCNQLQFLNLGWCENVSDVGVMSLAYGCRDLRTLDLCGCVLITDDSVIALANRCPHLRSLGLYFCQNITDRAMYSLAQSKVNNRMWGSMKGGGNNDDNDDGLRTLNISQCTALTPSAVQAVCDSCPSLHTCSGRHSLIMSGCLNLTSVHCACAGQAHRAFTLPHAAH*

>Glyma13g09290.4   sequence type=predicted peptide   gene model=Glyma13g09290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGKESLRTHEVLNFSFEKLMMVDCGGNSGKGVNFKAGVITEWKDIPVELLMQILSLVDDQTVMIASEVCRGWREAICFGLTRLSLSWCSKNMNNLVLSLAPKFTKLQTLILRQDKPQLEDNAVETISNFCHDLQILDLSKSFKLTDHSLYAIALGCQDLTKLNISGCSAFSDNALAYLASFCRKLKVLNLCGCVKAASDTALQAIGHYCNQLQFLNLGWCENVSDVGVMSLAYGCRDLRTLDLCGCVLITDDSVIALANRCPHLRSLGLYFCQNITDRAMYSLAQSKVNNRMWGSMKGGGNNDDNDDGLRTLNISQCTALTPSAVQAVCDSCPSLHTCSGRHSLIMSGCLNLTSVHCACAGQAHRAFTLPHAAH*

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