SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G10370 | AT | Annotation by Michelle Graham. TAIR10: helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related | chr5:3261245-3267188 FORWARD LENGTH=1775 | SoyBase | E_val: 7.00E-88 | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008026 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR18934 | Panther | ATP-DEPENDENT RNA HELICASE | JGI | ISS | |
| PF04408 | PFAM | Helicase associated domain (HA2) | JGI | ISS | |
| UniRef100_G7J375 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pre-mRNA splicing factor ATP-dependent RNA helicase-like protein n=1 Tax=Medicago truncatula RepID=G7J375_MEDTR | SoyBase | E_val: 1.00E-95 | ISS |
| UniRef100_I1MYP1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MYP1_SOYBN | SoyBase | E_val: 1.00E-121 | ISS |
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Glyma13g09250 not represented in the dataset |
Glyma13g09250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g036900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g09250.1 sequence type=CDS gene model=Glyma13g09250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACCTAAATCAAGAGTCGGAGATTCGGAGAGTTCATCTTGGTGTAGCAGTTCTGAGGATCCTTGCTTTAGGAGTGAAAGATGTGCTAGGTTTTGATTTTGTGGATGCTCCAAGTCCTAGCTCCATAGATATGGCAATCAAAAATCTAATTCAATTACGAGCCATTGAACTCAACTATGATGTTCATGATTTAACTTCTGAAGGTTGGTGCTTGGTAAGAATGGGAATTGAACCTAGGCTGGGTAAACTTATTCTTGGTTGTTTCAAACATGGTTTGGGTAAGGAAGGTATCATCCTTGCTACTGTGATGGCCAATGCTAGTAGCATCTTTTGCAGAGTTGGCAGTGAATTTGATAAACAAAGATTTGATGGTCTTAAAGTGCAATTTTGCCATTGTGATGGTGACCTCTTTACTCTTCTCTCTGTGTACAAGGAATGGGAAGCTTTGCCTCGAGAAAGGAAGAACAAATGGTGTTGGGAAAACAATATCAATGCCAAATCCATGAGGAGTTACTGGCGTTGGGACACTTGTATGCCTTCTAATCATGATAAGAATTTGAAAAGGGTAATACTGTCCTCACCTGCTGAGAATGTAGCCATGTACTCCGGCTGCTTCATTGAAGTGAATGTTGACAATAATGAAATCCACTTATATGCCTCTTCAAATTATATGGATATAGCCCTTGGGTTGGTTAATGATGTTCTAGAATAA
>Glyma13g09250.1 sequence type=predicted peptide gene model=Glyma13g09250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDLNQESEIRRVHLGVAVLRILALGVKDVLGFDFVDAPSPSSIDMAIKNLIQLRAIELNYDVHDLTSEGWCLVRMGIEPRLGKLILGCFKHGLGKEGIILATVMANASSIFCRVGSEFDKQRFDGLKVQFCHCDGDLFTLLSVYKEWEALPRERKNKWCWENNINAKSMRSYWRWDTCMPSNHDKNLKRVILSSPAENVAMYSGCFIEVNVDNNEIHLYASSNYMDIALGLVNDVLE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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