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Report for Sequence Feature Glyma13g09240

Feature Type:gene_model
Chromosome:Gm13
Start:10349204
stop:10350670
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g09240
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G31130AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1); Has 246 Blast hits to 244 proteins in 29 species: Archae - 2; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 222; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:11114963-11115928 REVERSE LENGT SoyBaseE_val: 2.00E-60ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009814GO-bp Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction SoyBaseN/AISS
GO:0048767GO-bp Annotation by Michelle Graham. GO Biological Process: root hair elongation SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_C6T941UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T941_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9SA06UniRef Annotation by Michelle Graham. Most informative UniRef hit: F28K20.6 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SA06_ARATH SoyBaseE_val: 8.00E-58ISS

Expression Patterns of Glyma13g09240
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g09240
ParalogEvidenceComments
Glyma14g26700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g09240 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g037000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g09240
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g09240
>Glyma13g09240.1   sequence type=CDS   gene model=Glyma13g09240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAGAGAACAAGAAGAGATGCAATTTCTTGGGTTCTTTGACATATACAAAGAAGCCTCTAAGATCATACTTTCATGGAGGAAAATCTTCACCCAAATCACCTCAACACTAATCCTGCCTCTCTCCTTCATCTTCCTAATCCACATGGAAATCTCCAACCTCCTTTTCAGGAAGATCCTCATCAACGAAATAGTCATGGACGAAACAAGGCGTAACACACCCCAATACAACAAGCTTGACCGCATGATCTCTTCTGAATTGATCACTCTTGTGCTCTTCAAAATCGCATACTTCACTCTTCTTCTCATATTCTCTCTCCTTTCTACCTCGGCAGTAGTCTACACCATCGCATCAATCTACACCGCAAAAGAAGTGACATTCAAGAGGGTCATGAGTGTTGTCCCTAAGGTGTGGAAAAGGTTAATGTTGACCTTTCTATGTGCCTTTGCTGCTTTTTTCATTTACAATATCGTGACCATGTTGGTTATGTTCTTGTCAATAGTCACAATAGGGATAAGTAGTGGTGGGGTTGTGGTTTTGGTTTTGATAACGGTTTTGTACTTCATTGGGTTTGTGTACCTCACCGTGGTGTGGCAGCTAGCAAGTGTTGTGACCGTGTTGGAGGACTCGTGGGGGATTCGAGCCATGGCCAAGAGCAAGGAGTTGATAAAGGGGAAGATGGTTTTATCCATATTCGTCTTTTTCACCCTTGTGGCTTCTTTTGTTTCCATTAGGGTTTTGTTCAAGGTGATGGTGGTTGATGGATGGAGGGTGAGTTCTGTGGACAAAACAGCATATGGGGTTCTCTGTTTCTTGCTCTTGTCTTGTTTGTTCCTCTTTGGGCTTGTTCTTCAAACTGTGCTCTACTTTGTTTGCAAGTCCTATCACCATGAGAATATTGACAAATCGGCTTTGGCAGATCATCTTGAAGGGTATAGAGGAGAGTATGTTCCATTGACAGCTAAGGATGTTCAGCTGGAGCAATACCAAGTTTGA
Predicted protein sequences of Glyma13g09240
>Glyma13g09240.1   sequence type=predicted peptide   gene model=Glyma13g09240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDREQEEMQFLGFFDIYKEASKIILSWRKIFTQITSTLILPLSFIFLIHMEISNLLFRKILINEIVMDETRRNTPQYNKLDRMISSELITLVLFKIAYFTLLLIFSLLSTSAVVYTIASIYTAKEVTFKRVMSVVPKVWKRLMLTFLCAFAAFFIYNIVTMLVMFLSIVTIGISSGGVVVLVLITVLYFIGFVYLTVVWQLASVVTVLEDSWGIRAMAKSKELIKGKMVLSIFVFFTLVASFVSIRVLFKVMVVDGWRVSSVDKTAYGVLCFLLLSCLFLFGLVLQTVLYFVCKSYHHENIDKSALADHLEGYRGEYVPLTAKDVQLEQYQV*






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