Glyma13g09220 - SoyBase

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Report for Sequence Feature Glyma13g09220

Feature Type:	gene_model
Chromosome:	Gm13
Start:	10255801
stop:	10259911
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g09220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G21450	AT	Annotation by Michelle Graham. TAIR10: SCARECROW-like 1 \| chr1:7509721-7511502 FORWARD LENGTH=593	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF03514	PFAM	GRAS family transcription factor	JGI		ISS
UniRef100_B9H7M7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GRAS family transcription factor n=1 Tax=Populus trichocarpa RepID=B9H7M7_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1LXB0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXB0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g09220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g09220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g037100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g09220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g09220

Limit To All Plant Sequences

>Glyma13g09220.1   sequence type=CDS   gene model=Glyma13g09220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATTGGTTATATCTACAGAGTTGGCTGATACATCATATGGGAATGCCAAGCTCTACACACTAAAGGGAACTGATGTTACACCAGATTTGTCCTCCCACAATTTTGCACCAGATAAGCACAGAAACATGTACATGACAAAGTCATACTCCTGTGAGAGTTATGAAAAGTACTTCCACGATTCACCAACAGAAGAGCTGATAGAACCATCAAGTTCCAGCATATCAGGAAACTCAGTTCACCCTGATGGTGCTTCTTCTTACCTGCTCAGAGCTAGTTCAGGAGCTTCTGTGATTGTTAATAACCCATTTGACACTTCTATCTGGTCTACAAGGCATCGCGATGCCTATCAGTCCAATTCTGTATCAGATTTCGTGGAAAATGGGAGCCCGGATGGCCTTGACTTCGATGGTGAAATGAGACTAAAACTTCAAGAATTGGAGAGGGCTTTGCTTTCTGATGAAGAAGAGGAGGAGCAAGGCATATTTGAGACTGTTCAAAGCATGGAGATTGATCCTGACATGGTCGAGTGGGCCAATCCGCTTCAAGATATGCTGCTCCATGACTCACCAAAGGAGTCCTCATCCTCAGATTCTTCCAATCTTAGCAGCATCAGTAGCACCACCAAAGACACATCACAAAACTCACCCCAAACCCCTAAGCAACTGCTTTATGATTGTGCTAGGATACTTTCAGAAGGAAATGAACAGGAAGCCACATCTATGATAAACAAGCTCCGGCAAATGGTCTCAATTCAGGGTGATCCTTCTCAGAGAATTGCAGCTTACATGGTGGAAGGACTTGCAGCTCGTGTCGCTACATCCGGAAAATGCATCTATCAAGCATTGAGATGCAAGGAACCTCCTTCTAACGATCGCTTAGCAGCAATGCAAATACTATTTGAGGTCTGCCCGTGTTTTAAATTTGGATACATCGCGGCAAATGGTGCAATAGCTGAGGCTGTTAGAGATGAAAAGAAGGTTCACATAATAGACTTTGACATCAGCCAAGGAACTCAATACATAACTCTAATACAAACACTTGCTTCAATGCCAGGTAGGCCACCTCATGTGAGATTAACCGGGGTGGATGATCCTGAGTCTGTGCAGCGTTCCATTGGTGGCATAAACATCATAGGACAAAGACTTGAAAAGCTGGCAGAGGAACTTGGATTGCCATTTGAGTTTCGAGCAGTGGCGTCAGGGACCTCAAATGTCACACAATCAATGCTTGACTGTCGTCCGGGGGAAGCACTTGTGGTGAACTTTGCATTCCAGCTTCACCACATGCGCGATGAAACTGTATCGACAGTGAACGAGCGAGACCAACTTCTTCGCATGGTTAAGAGCTTGAATCCAAAACTTGTGACAGTTGTGGAGCAGGACATGAACACCAACACCTCCCCTTTTCTCCCAAGATTTGTTGAAGCCTACAATTACTACTCTGCTGTGTTTAACACACTTGATGCAACTCTCCCTAGGGAGAGCCAGGACAGGATGAATGTCGAAAGGCAATGCCTGGCAAAGGACATAGTCAACATTGTTGCTTGCGAGGGTGAGGAAAGAATAGAACGGTATGAAGTCGCCGGAAAATGGAGGGCAAGGTTGTCAATGGCTGGCTTCACTCCATCCCCAATGAGCACAAATGTGAGAGAAGCAATTAGGAAACTCATTATTAAGCAATACTGTGACAAATTCAAGATAAAGGAGGAAATGGGGGGTCTTCATTTTGGGTGGGAAGACAAAAACTTAATTGTTGCTTCAGCATGGAAGTGA

Predicted protein sequences of Glyma13g09220

Limit To All Plant Sequences

>Glyma13g09220.1   sequence type=predicted peptide   gene model=Glyma13g09220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLVISTELADTSYGNAKLYTLKGTDVTPDLSSHNFAPDKHRNMYMTKSYSCESYEKYFHDSPTEELIEPSSSSISGNSVHPDGASSYLLRASSGASVIVNNPFDTSIWSTRHRDAYQSNSVSDFVENGSPDGLDFDGEMRLKLQELERALLSDEEEEEQGIFETVQSMEIDPDMVEWANPLQDMLLHDSPKESSSSDSSNLSSISSTTKDTSQNSPQTPKQLLYDCARILSEGNEQEATSMINKLRQMVSIQGDPSQRIAAYMVEGLAARVATSGKCIYQALRCKEPPSNDRLAAMQILFEVCPCFKFGYIAANGAIAEAVRDEKKVHIIDFDISQGTQYITLIQTLASMPGRPPHVRLTGVDDPESVQRSIGGINIIGQRLEKLAEELGLPFEFRAVASGTSNVTQSMLDCRPGEALVVNFAFQLHHMRDETVSTVNERDQLLRMVKSLNPKLVTVVEQDMNTNTSPFLPRFVEAYNYYSAVFNTLDATLPRESQDRMNVERQCLAKDIVNIVACEGEERIERYEVAGKWRARLSMAGFTPSPMSTNVREAIRKLIIKQYCDKFKIKEEMGGLHFGWEDKNLIVASAWK*

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