Glyma13g09210 - SoyBase

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Report for Sequence Feature Glyma13g09210

Feature Type:	gene_model
Chromosome:	Gm13
Start:	10243782
stop:	10255080
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g09210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25800	AT	Annotation by Michelle Graham. TAIR10: Polynucleotidyl transferase, ribonuclease H-like superfamily protein \| chr5:8979761-8982724 REVERSE LENGTH=567	SoyBase	E_val: 0	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0004527	GO-mf	Annotation by Michelle Graham. GO Molecular Function: exonuclease activity	SoyBase	N/A	ISS
KOG2248	KOG	3'-5' exonuclease	JGI		ISS
PTHR12801	Panther	EXONUCLEASE	JGI		ISS
PF00929	PFAM	Exonuclease	JGI		ISS
UniRef100_B9S2M9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rnase h, putative n=1 Tax=Ricinus communis RepID=B9S2M9_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LXA9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LXA9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g09210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g09210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g037300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g09210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g09210

Limit To All Plant Sequences

>Glyma13g09210.1   sequence type=CDS   gene model=Glyma13g09210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCCAAGTAGTAGCCGCAGAGAGAATGGGTTCCTCGGAAGCCGAAAACGAGGCTCTCCGTGGCGCCGAAGAAGAAGAGGGTTCTACTTCTAACAAGAAATGCGGCAAGTTCTACGATGTTTATGGACCCGAAGGCAAGGCAGACATTGTTTTTAACTCACCAGAAGATAATTCAACTCTCAATCTTAGTGATGTTCAAGGACTTGTAACTTGGGTGCTCAGTGAAGGATTTATGCCGTCATGGGTTTTTATTAAGAATAAACCTCTTATTCCCAAAGTGGTTATGCTCTATGTGCCAGGCCTGGATGCAGCTTTGTTCTTGTCACAGTCTAAAATGCTTCCAAGATTAAAAAAATTCTGTGGCAAACCAAGGGCACTCCTAGCTCTTAGCTGTGTGTCAGATGGTATGCAGACGATAGATGCACTCCTAACATGCAAGATGAAAAGGAAAAGGGACGAGAATAGTTCAATTATGGGGAAATTTGCTCGGACATCTCAACAAGAAGAAGGTTGTTGTGATACAGACAGTCTATCATTTAAGGAGCTTACAAAAGACATACCTTTCCCTGTTACATACTATACACTAACAGAGAAAGAGTTGGAAGAGAATGGATATTCTGTTAATAAGCCAGGTTTTCTTTCTACTTTGCCCGCTCCTTCAGGATCTCCTTTTTATGAGATGTTGGCACTTGATTGTGAGATGTGCATAACAAGTGAAGGTTTTGAGCTGACAAGAATTACTCTAGTAGATGTCAAAGGACAGGTTTTGATAGATAAATTGGTTAAACCATCAAATGCCATCACTGATTACAACACAAGATTTAGTGGAATAACGTCTGAGATGTTAGATGGCGTGACAACAAGTCTGAGAGACATTCAGGAAGAGTTCATAAAGTTGGTTTACAAGGAGACTATCCTTGTTGGGCATTCTCTGGAAAACGATTTGTTAGCATTGAATATATCTCATGACTCGGTCATTGACACAGCAGTATTATACAAACACCCCCGAGGATCGTCTCATAAAAATGCTCTACGGTTTCTTACTAAGAGATTTCTTTCAAGGGAAATCCAACAGTCAGGGAATGGACATGACAGCATTGAAGATGCTAGAGCTACCATGGAATTGGCACTATTGAAGATCAGAAATGGGCCTGATTTTGGTTCCCCTCCATCCTTTACAAGGAAAAAGCTCCTTTCTATTCTGAGTGAGTCTGGCAAAATTTCCTCACTGATTGATGATATATCCGTAGTAAAACGGTATGCCTCAGAGTCCTCTCATGCAATTCCAGTGACCTCTGATGATGTAGCACTTGCAAAGGCCAACAAGGAGGTGAAGAATGAAAAGGTACATTTTATCTGGACTCAGTTTTCAGAGCTACACTCGTACTTGAAGAAACAAGCTGAAGATTCTGAGAGCTTGAATAAAAGACTTGCAGAGATGATTGCAATAAAAACATGTCAAAATAATTTTGCAAAAGGGAAAGGCTTCAAGTTAAATGCATCTGCTGAACTGAAGGAAATTCTGGCTCGCATGGACGCTAGAATTCATAATCTGTATTTGTCATTACCCACAAATGCTATGATGATAATTTGCACTGGTCATGGAGACACTGCTATTGTCCGCAGGCTGAGGAAAATGCTTACGGAGCAGAATGAAAGCAATTTATGTCGGGAAGAGATTGTGGAAATATTGGAAGAGGTTCAGGCCCGAGCTGAAGTAGCCTTGTGTTTTGTAGGTGTAAAACATTGA

Predicted protein sequences of Glyma13g09210

Limit To All Plant Sequences

>Glyma13g09210.1   sequence type=predicted peptide   gene model=Glyma13g09210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFQVVAAERMGSSEAENEALRGAEEEEGSTSNKKCGKFYDVYGPEGKADIVFNSPEDNSTLNLSDVQGLVTWVLSEGFMPSWVFIKNKPLIPKVVMLYVPGLDAALFLSQSKMLPRLKKFCGKPRALLALSCVSDGMQTIDALLTCKMKRKRDENSSIMGKFARTSQQEEGCCDTDSLSFKELTKDIPFPVTYYTLTEKELEENGYSVNKPGFLSTLPAPSGSPFYEMLALDCEMCITSEGFELTRITLVDVKGQVLIDKLVKPSNAITDYNTRFSGITSEMLDGVTTSLRDIQEEFIKLVYKETILVGHSLENDLLALNISHDSVIDTAVLYKHPRGSSHKNALRFLTKRFLSREIQQSGNGHDSIEDARATMELALLKIRNGPDFGSPPSFTRKKLLSILSESGKISSLIDDISVVKRYASESSHAIPVTSDDVALAKANKEVKNEKVHFIWTQFSELHSYLKKQAEDSESLNKRLAEMIAIKTCQNNFAKGKGFKLNASAELKEILARMDARIHNLYLSLPTNAMMIICTGHGDTAIVRRLRKMLTEQNESNLCREEIVEILEEVQARAEVALCFVGVKH*

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