SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G04760 | AT | Annotation by Michelle Graham. TAIR10: Duplicated homeodomain-like superfamily protein | chr5:1373752-1374529 REVERSE LENGTH=215 | SoyBase | E_val: 8.00E-23 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0010286 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heat acclimation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| PTHR25040 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR25040:SF29 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00249 | PFAM | Myb-like DNA-binding domain | JGI | ISS | |
| UniRef100_I1LXA5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LXA5_SOYBN | SoyBase | E_val: 5.00E-153 | ISS |
| UniRef100_Q8S900 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Syringolide-induced protein 1-3-1A n=1 Tax=Glycine max RepID=Q8S900_SOYBN | SoyBase | E_val: 3.00E-21 | ISS |
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Glyma13g09060 not represented in the dataset |
Glyma13g09060 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g038200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g09060.1 sequence type=CDS gene model=Glyma13g09060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTCAGCTGCAGAGGAGAAACACGCGTACTCGTTGGACCGAAGAGGAACACAGGTTATTTCTTATTGGGATGGAGAGATTTGGTAAAAGTAATTGGACAAACATTGCACAACATGTTGTGTTGACAAAAACTCCCTCCCAAGTTGCTAGCCACGCCCAAAAGTTTTTCCTCCACCATAGTAGTGTCAAACAAAGCAAAAGACAGAGGAAAATCCCCAGCATACACGACATAACCCTGGTCTCACAACCAGTTTCCCAACACAACCCAGTAAATGATCAATTAGCAGAGAAACTGCATGTGGTTCCCTCACAACAATTGACAGACTTTGAAGGTTGCTTGGCAATTCACCTCAATGACCAGCTGAGTAGGCCTCCCTCAACAATGGCACAAGATCTGCAAATTCAGCAATTGCCTCACTTCGTTGACCATGATAGCTGGGTTTCAACTCCAAATCAACAGGTTCCAAAATTACCCCACAATCTTCTTGACCAGGATAAGTGGATTCCTCCACTAGGTCTGCAAATTCACCAATTTTCTGACTTAATTGATGACCATATTGATTTGGCTCCTCTCCCTGATCTACTAGAGTTACCTCTCCCTTATCTACCCTTACCTCACCATCTTGACCAGGAGAAGTGGATTCCACCACAAGATCTGCAAACTCACCAACTGCCTCACTTCATGGATCATGATAACTGGGTTTCAACTCCAAATCAACAGTTTCCAGAATTACCCCACCATCTTCTTGACCAGGAGAACTGGACTCCTCCACTAGATCTGGAAATTCACCAATTTTCTGACTTCATTGATGATCCTCTTGATTTGGATCCTCTCCATGATCTGCTAGAATTACCTCTCCCTGATCTACTACTAAAATTGTCTCACCATCTTGACCAGGAGAAGTGGATTCCTCCACCAAATTCACCAATTTCCTGA
>Glyma13g09060.1 sequence type=predicted peptide gene model=Glyma13g09060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPQLQRRNTRTRWTEEEHRLFLIGMERFGKSNWTNIAQHVVLTKTPSQVASHAQKFFLHHSSVKQSKRQRKIPSIHDITLVSQPVSQHNPVNDQLAEKLHVVPSQQLTDFEGCLAIHLNDQLSRPPSTMAQDLQIQQLPHFVDHDSWVSTPNQQVPKLPHNLLDQDKWIPPLGLQIHQFSDLIDDHIDLAPLPDLLELPLPYLPLPHHLDQEKWIPPQDLQTHQLPHFMDHDNWVSTPNQQFPELPHHLLDQENWTPPLDLEIHQFSDFIDDPLDLDPLHDLLELPLPDLLLKLSHHLDQEKWIPPPNSPIS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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