|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G43800 | AT | Annotation by Michelle Graham. TAIR10: Plant stearoyl-acyl-carrier-protein desaturase family protein | chr1:16577662-16579549 FORWARD LENGTH=391 | SoyBase | E_val: 1.00E-157 | ISS |
GO:0001666 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hypoxia | SoyBase | N/A | ISS |
GO:0006631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process | SoyBase | N/A | ISS |
GO:0006633 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process | SoyBase | N/A | ISS |
GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
GO:0010089 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem development | SoyBase | N/A | ISS |
GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
GO:0044036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process | SoyBase | N/A | ISS |
GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
GO:0045300 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acyl-[acyl-carrier-protein] desaturase activity | SoyBase | N/A | ISS |
GO:0046914 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transition metal ion binding | SoyBase | N/A | ISS |
PF03405 | PFAM | Fatty acid desaturase | JGI | ISS | |
UniRef100_Q9XFC1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Stearoyl acyl carrier protein desaturase Lldd3A20 n=1 Tax=Lupinus luteus RepID=Q9XFC1_LUPLU | SoyBase | E_val: 2.00E-174 | ISS |
UniRef100_UPI000233AF84 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233AF84 related cluster n=1 Tax=unknown RepID=UPI000233AF84 | SoyBase | E_val: 0 | ISS |
Glyma13g08963 not represented in the dataset |
Glyma13g08963 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.13g038700 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g08963.1 sequence type=CDS gene model=Glyma13g08963 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGCCGGAAAAGATAGAGATTTTCAAGTCACTAGAGGGATGGGCCTCGCAGCAGGTCCTGCCACTGCTGAAGCCCGACTTCGTCCCCAACTCCTCATTGCCGTTCAAAGAGTTCACCGATGAGGTTAGGGCTCTTCGCGAGCGCACGATGGAGCTACCGGACGAGTACTTTGTGGTGCTGGTGGGAGACATGATTACGGAGGAAGCGCTTCCTACTTACCAGACCACGATGAACAACCTCGATGGGGTGAGAGATGAGTACGGAGCATGCCAAAGCCCGTGGGCCGTGTGGACCCGGGCCTGGTCCGTGGAAGAAAACAGGCACGGGGATTTGCTCAAAACCTATATGTATCTTTCTGGCCGTGTTGATATGGAGAGGGTCGAGAAGACTATTCATTACCTCATTGCTTCAGGCTGGGATGTTGGTATGGAGAACAACCCATATTTGGGGTTTGTGTACACGTCATTCCAAGAGCGAGCAACATTCGTGGCACATGGGAACACAGCTCGGCTTGCGAAGGAGGGTGGTGATCCACTTCTAGAAGTGGACCCCACCGGGGCAATGTTGGCCATAGGAAAAATGATGCAGAAAAAGATCATAATGCCGGCGCACCTTATGTACGATGGGGATGACCCCAGGCTATTTGAACACTACTCCGCGGTGGCGCAACGTATAGGCGTGTACACGGCCAATGACTATGCAAACATCTTGGACTTTCTGGTTGGACGGTGGAGATTGGAGAAGCTGGAAAGTTTGACGGCTGAGGGAAAGAGGGCACAGGATTACGTGTGTGAGTTACCACCGAGGATTAGGAAGTTGCAAGAGCGAGCTGATGAGCGAGCGCGTAAGATGAAGCCTAATAGCTTCAAGTTCAATTGGATATTTAACAAAGAGTTGCTTTTGTGA
>Glyma13g08963.1 sequence type=predicted peptide gene model=Glyma13g08963 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPEKIEIFKSLEGWASQQVLPLLKPDFVPNSSLPFKEFTDEVRALRERTMELPDEYFVVLVGDMITEEALPTYQTTMNNLDGVRDEYGACQSPWAVWTRAWSVEENRHGDLLKTYMYLSGRVDMERVEKTIHYLIASGWDVGMENNPYLGFVYTSFQERATFVAHGNTARLAKEGGDPLLEVDPTGAMLAIGKMMQKKIIMPAHLMYDGDDPRLFEHYSAVAQRIGVYTANDYANILDFLVGRWRLEKLESLTAEGKRAQDYVCELPPRIRKLQERADERARKMKPNSFKFNWIFNKELLL*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||