SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G21360 | AT | Annotation by Michelle Graham. TAIR10: glycolipid transfer protein 2 | chr1:7481365-7483237 FORWARD LENGTH=223 | SoyBase | E_val: 1.00E-76 | ISS |
| GO:0046836 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolipid transport | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0017089 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glycolipid transporter activity | SoyBase | N/A | ISS |
| GO:0051861 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glycolipid binding | SoyBase | N/A | ISS |
| KOG3221 | KOG | Glycolipid transfer protein | JGI | ISS | |
| PTHR10219 | Panther | GLYCOLIPID TRANSFER PROTEIN-RELATED | JGI | ISS | |
| PTHR10219:SF4 | Panther | HET-C | JGI | ISS | |
| PF08718 | PFAM | Glycolipid transfer protein (GLTP) | JGI | ISS | |
| UniRef100_G7J670 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pleckstrin homology domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J670_MEDTR | SoyBase | E_val: 1.00E-99 | ISS |
| UniRef100_I3SB29 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Lotus japonicus RepID=I3SB29_LOTJA | SoyBase | E_val: 2.00E-115 | ISS |
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Glyma13g08901 not represented in the dataset |
Glyma13g08901 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g039200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g08901.1 sequence type=CDS gene model=Glyma13g08901 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATATGGAAAGGGAAGGGAATAAAATGAAGAGCACTAGGAGAGAAATGGAGAAGAAGTCAGAGATAGGTTTAGTCATTGAAGAGCTTTCTATGATAGCCATAGTTAAACCTGGTGAAAATCATGACTCTGCTCACATCCCCACCAAGCTTTTCCTCTCGATTTGTTACTTGGTTCTACAAGTTCTTGATAAGATTGGGCCAACAATGGCTGTCTTGAGACAGGACGTGTACCAGAATATTAAGACATTGGAACTGATGCAGGAATCAAATCCCTCATTGCACTCGAATTTGGTTGAGATATTGAAGTCAGAAGCAACCGAAGGCAATTCTTGGAAAGGGTCAAGCTGCAGTAAGGCCCTTGTTTGGCTCACTAGGACCCTGGATTTCACCTCGCTGTTGTTACAAACACTAGCAAATGATCCTGAAAAGAGAATGGAACAAATAGTTGAAGAGGCTTATGATGTAACTTTAAAACCGTGGCATGGATGGATTTCATCAACTGCTTTCAGAGTGGCTCTAAAACTGGTACCTGAAAGTAAAACATTCGTGAATATTCTTAAAACTGAAGATGAAAACTATGACACCCTAAAGGAGAAAATGCAGATGCTGGTTTCTCTGTTTGTGCCTTTTCTTGAGGATATGCATTGTATTCTGAGATTGTACAACTTGGACAAGCTAAAGTCAACCTGA
>Glyma13g08901.1 sequence type=predicted peptide gene model=Glyma13g08901 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNMEREGNKMKSTRREMEKKSEIGLVIEELSMIAIVKPGENHDSAHIPTKLFLSICYLVLQVLDKIGPTMAVLRQDVYQNIKTLELMQESNPSLHSNLVEILKSEATEGNSWKGSSCSKALVWLTRTLDFTSLLLQTLANDPEKRMEQIVEEAYDVTLKPWHGWISSTAFRVALKLVPESKTFVNILKTEDENYDTLKEKMQMLVSLFVPFLEDMHCILRLYNLDKLKST*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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