SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G53310 | AT | Annotation by Michelle Graham. TAIR10: myosin heavy chain-related | chr5:21634657-21636094 FORWARD LENGTH=210 | SoyBase | E_val: 1.00E-82 | ISS |
| GO:0006623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003774 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: motor activity | SoyBase | N/A | ISS |
| PF06017 | PFAM | Myosin tail | JGI | ISS | |
| UniRef100_I1LX78 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LX78_SOYBN | SoyBase | E_val: 2.00E-153 | ISS |
| UniRef100_Q9ASY2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT5g53310/K19E1_11 n=1 Tax=Arabidopsis thaliana RepID=Q9ASY2_ARATH | SoyBase | E_val: 5.00E-80 | ISS |
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Glyma13g08460 not represented in the dataset |
Glyma13g08460 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g040600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g08460.2 sequence type=transcript gene model=Glyma13g08460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAATGTGTCTGGCGGGAAGAAGAAATTATTTTACAATTTTATTACTCCAACCACAAGGCAAGCACATAAGCACAATCATCGATATCTTCAACTTCATCGCACCTGGTGGGGTCCACCTCCACCACCAGCACATGCTCCTACCTCTCTTTTTCCAATTCGAACAGGACCTTCTTTAATCGCCACCCATTCGATACCACCCTCTCCCTCCGGTTCCGATTCAACGGTTCTAGAAGATGCCTCGGCGGGTCCAGATCGAAGATCCCAAATACGACGACGTTCCTGACGCCGACGAACCGGAGGAAACGATCCGTTTCAAATCCTCCAACAGCAACGTCTCCGACGACCAAGAACCCTTCATGGGCATCAAGGTTCGCCGAAAAGCCTCTCTCCACAGAGACCACAAAGGAGACTACCTCAACGTCCCTTCCCACCCTTTCCTAATCAAAATTCTACAGAAACAAGGGGACAATGAGGTTCTGTTTGCGGACAGGGTTCTGAAGTTTACGGGCTCCGGGAAGATGAAACGCTGCGTTCTGATGATCACGGATTCTGCGATTTACATCGTTGACCCTGAGGTGGACGCGCTGAAGCGGAGAATAGTGCTTGCGGCGGTGGAGAGGGTTTGTCTGAGTGAACTGAGTGATAATTTTTTCGCGGTGATTGTTCCGTCGGAGTATGATTTGCTCATGGCTAGTACTCGGAAGACGGAGATTGTCACGGTGCTGGTCGAGGCTACCAAGGCCAAGAGTGCGACGGGGTTCGAACTCGATGTCGTTTTCTCCAATAGATTTGAGTATAACGCGGCATCTGACTTGGTGAAGGAAGTTCAATTTGAGGAAGTTGAAGGTATGTGACAAATTTTATTTTCTCCCTCCCCACTTTTTGACAGGCATATATAGGTGGTGATTATAATCAATGCCACCATTCCATCCAATCCATTTTTATATTTCTTTGTTATAGGGTTCTTTCTGCCTCATTCGTTTTAAGGTTCATTTATTTCTTACTAAATTTCAGGGGGTGTCAAAACAAGAATTTTGAGGAAGTGAATTATGGTCCAAAATTTTGATGAACTTGTCTGTAAACTATGTAAGAGATACAGAGTCTGATTTTTGAGTGGTATTATGGAATGTGTTCTTCTGGCAACAGGTTTTCCACTCAAAAATGACTTTGTTTATAATTATGATGTCAGAAATTTTAAGAGAAAAAGAAAGATATGTCTGATATATGTTTAACTTGAAAATTGAAAAGAGATTCATATGTACTGGACTTGTTGAATGTGATTATATCAGTTTCTCGGATGAAAATATGAACATTTTTGTTATTTTTCATTTCTTTTGTATCATTTCTATACACCCTACCCCTTGATTTAGTTTTAAG
>Glyma13g08460.1 sequence type=CDS gene model=Glyma13g08460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTCGGCGGGTCCAGATCGAAGATCCCAAATACGACGACGTTCCTGACGCCGACGAACCGGAGGAAACGATCCGTTTCAAATCCTCCAACAGCAACGTCTCCGACGACCAAGAACCCTTCATGGGCATCAAGGTTCGCCGAAAAGCCTCTCTCCACAGAGACCACAAAGGAGACTACCTCAACGTCCCTTCCCACCCTTTCCTAATCAAAATTCTACAGAAACAAGGGGACAATGAGGTTCTGTTTGCGGACAGGGTTCTGAAGTTTACGGGCTCCGGGAAGATGAAACGCTGCGTTCTGATGATCACGGATTCTGCGATTTACATCGTTGACCCTGAGGTGGACGCGCTGAAGCGGAGAATAGTGCTTGCGGCGGTGGAGAGGGTTTGTCTGAGTGAACTGAGTGATAATTTTTTCGCGGTGATTGTTCCGTCGGAGTATGATTTGCTCATGGCTAGTACTCGGAAGACGGAGATTGTCACGGTGCTGGTCGAGGCTACCAAGGCCAAGAGTGCGACGGGGTTCGAACTCGATGTCGTTTTCTCCAATAGATTTGAGTATAACGCGGCATCTGACTTGGTGAAGGAAGTTCAATTTGAGGAAGTTGAAGGGGGTGTCAAAACAAGAATTTTGAGGAAGTGA >Glyma13g08460.2 sequence type=CDS gene model=Glyma13g08460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTCGGCGGGTCCAGATCGAAGATCCCAAATACGACGACGTTCCTGACGCCGACGAACCGGAGGAAACGATCCGTTTCAAATCCTCCAACAGCAACGTCTCCGACGACCAAGAACCCTTCATGGGCATCAAGGTTCGCCGAAAAGCCTCTCTCCACAGAGACCACAAAGGAGACTACCTCAACGTCCCTTCCCACCCTTTCCTAATCAAAATTCTACAGAAACAAGGGGACAATGAGGTTCTGTTTGCGGACAGGGTTCTGAAGTTTACGGGCTCCGGGAAGATGAAACGCTGCGTTCTGATGATCACGGATTCTGCGATTTACATCGTTGACCCTGAGGTGGACGCGCTGAAGCGGAGAATAGTGCTTGCGGCGGTGGAGAGGGTTTGTCTGAGTGAACTGAGTGATAATTTTTTCGCGGTGATTGTTCCGTCGGAGTATGATTTGCTCATGGCTAGTACTCGGAAGACGGAGATTGTCACGGTGCTGGTCGAGGCTACCAAGGCCAAGAGTGCGACGGGGTTCGAACTCGATGTCGTTTTCTCCAATAGATTTGAGTATAACGCGGCATCTGACTTGGTGAAGGAAGTTCAATTTGAGGAAGTTGAAGGTATGTGA
>Glyma13g08460.1 sequence type=predicted peptide gene model=Glyma13g08460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPRRVQIEDPKYDDVPDADEPEETIRFKSSNSNVSDDQEPFMGIKVRRKASLHRDHKGDYLNVPSHPFLIKILQKQGDNEVLFADRVLKFTGSGKMKRCVLMITDSAIYIVDPEVDALKRRIVLAAVERVCLSELSDNFFAVIVPSEYDLLMASTRKTEIVTVLVEATKAKSATGFELDVVFSNRFEYNAASDLVKEVQFEEVEGGVKTRILRK* >Glyma13g08460.2 sequence type=predicted peptide gene model=Glyma13g08460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPRRVQIEDPKYDDVPDADEPEETIRFKSSNSNVSDDQEPFMGIKVRRKASLHRDHKGDYLNVPSHPFLIKILQKQGDNEVLFADRVLKFTGSGKMKRCVLMITDSAIYIVDPEVDALKRRIVLAAVERVCLSELSDNFFAVIVPSEYDLLMASTRKTEIVTVLVEATKAKSATGFELDVVFSNRFEYNAASDLVKEVQFEEVEGM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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