Glyma13g08460 - SoyBase

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Report for Sequence Feature Glyma13g08460

Feature Type:	gene_model
Chromosome:	Gm13
Start:	8920748
stop:	8929966
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g08460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G53310	AT	Annotation by Michelle Graham. TAIR10: myosin heavy chain-related \| chr5:21634657-21636094 FORWARD LENGTH=210	SoyBase	E_val: 1.00E-82	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003774	GO-mf	Annotation by Michelle Graham. GO Molecular Function: motor activity	SoyBase	N/A	ISS
PF06017	PFAM	Myosin tail	JGI		ISS
UniRef100_I1LX78	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LX78_SOYBN	SoyBase	E_val: 2.00E-153	ISS
UniRef100_Q9ASY2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5g53310/K19E1_11 n=1 Tax=Arabidopsis thaliana RepID=Q9ASY2_ARATH	SoyBase	E_val: 5.00E-80	ISS

Expression Patterns of Glyma13g08460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g08460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g040600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g08460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g08460

Limit To All Plant Sequences

>Glyma13g08460.2   sequence type=transcript   gene model=Glyma13g08460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATGTGTCTGGCGGGAAGAAGAAATTATTTTACAATTTTATTACTCCAACCACAAGGCAAGCACATAAGCACAATCATCGATATCTTCAACTTCATCGCACCTGGTGGGGTCCACCTCCACCACCAGCACATGCTCCTACCTCTCTTTTTCCAATTCGAACAGGACCTTCTTTAATCGCCACCCATTCGATACCACCCTCTCCCTCCGGTTCCGATTCAACGGTTCTAGAAGATGCCTCGGCGGGTCCAGATCGAAGATCCCAAATACGACGACGTTCCTGACGCCGACGAACCGGAGGAAACGATCCGTTTCAAATCCTCCAACAGCAACGTCTCCGACGACCAAGAACCCTTCATGGGCATCAAGGTTCGCCGAAAAGCCTCTCTCCACAGAGACCACAAAGGAGACTACCTCAACGTCCCTTCCCACCCTTTCCTAATCAAAATTCTACAGAAACAAGGGGACAATGAGGTTCTGTTTGCGGACAGGGTTCTGAAGTTTACGGGCTCCGGGAAGATGAAACGCTGCGTTCTGATGATCACGGATTCTGCGATTTACATCGTTGACCCTGAGGTGGACGCGCTGAAGCGGAGAATAGTGCTTGCGGCGGTGGAGAGGGTTTGTCTGAGTGAACTGAGTGATAATTTTTTCGCGGTGATTGTTCCGTCGGAGTATGATTTGCTCATGGCTAGTACTCGGAAGACGGAGATTGTCACGGTGCTGGTCGAGGCTACCAAGGCCAAGAGTGCGACGGGGTTCGAACTCGATGTCGTTTTCTCCAATAGATTTGAGTATAACGCGGCATCTGACTTGGTGAAGGAAGTTCAATTTGAGGAAGTTGAAGGTATGTGACAAATTTTATTTTCTCCCTCCCCACTTTTTGACAGGCATATATAGGTGGTGATTATAATCAATGCCACCATTCCATCCAATCCATTTTTATATTTCTTTGTTATAGGGTTCTTTCTGCCTCATTCGTTTTAAGGTTCATTTATTTCTTACTAAATTTCAGGGGGTGTCAAAACAAGAATTTTGAGGAAGTGAATTATGGTCCAAAATTTTGATGAACTTGTCTGTAAACTATGTAAGAGATACAGAGTCTGATTTTTGAGTGGTATTATGGAATGTGTTCTTCTGGCAACAGGTTTTCCACTCAAAAATGACTTTGTTTATAATTATGATGTCAGAAATTTTAAGAGAAAAAGAAAGATATGTCTGATATATGTTTAACTTGAAAATTGAAAAGAGATTCATATGTACTGGACTTGTTGAATGTGATTATATCAGTTTCTCGGATGAAAATATGAACATTTTTGTTATTTTTCATTTCTTTTGTATCATTTCTATACACCCTACCCCTTGATTTAGTTTTAAG

Coding sequences of Glyma13g08460

Limit To All Plant Sequences

>Glyma13g08460.1   sequence type=CDS   gene model=Glyma13g08460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCGGCGGGTCCAGATCGAAGATCCCAAATACGACGACGTTCCTGACGCCGACGAACCGGAGGAAACGATCCGTTTCAAATCCTCCAACAGCAACGTCTCCGACGACCAAGAACCCTTCATGGGCATCAAGGTTCGCCGAAAAGCCTCTCTCCACAGAGACCACAAAGGAGACTACCTCAACGTCCCTTCCCACCCTTTCCTAATCAAAATTCTACAGAAACAAGGGGACAATGAGGTTCTGTTTGCGGACAGGGTTCTGAAGTTTACGGGCTCCGGGAAGATGAAACGCTGCGTTCTGATGATCACGGATTCTGCGATTTACATCGTTGACCCTGAGGTGGACGCGCTGAAGCGGAGAATAGTGCTTGCGGCGGTGGAGAGGGTTTGTCTGAGTGAACTGAGTGATAATTTTTTCGCGGTGATTGTTCCGTCGGAGTATGATTTGCTCATGGCTAGTACTCGGAAGACGGAGATTGTCACGGTGCTGGTCGAGGCTACCAAGGCCAAGAGTGCGACGGGGTTCGAACTCGATGTCGTTTTCTCCAATAGATTTGAGTATAACGCGGCATCTGACTTGGTGAAGGAAGTTCAATTTGAGGAAGTTGAAGGGGGTGTCAAAACAAGAATTTTGAGGAAGTGA

>Glyma13g08460.2   sequence type=CDS   gene model=Glyma13g08460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCGGCGGGTCCAGATCGAAGATCCCAAATACGACGACGTTCCTGACGCCGACGAACCGGAGGAAACGATCCGTTTCAAATCCTCCAACAGCAACGTCTCCGACGACCAAGAACCCTTCATGGGCATCAAGGTTCGCCGAAAAGCCTCTCTCCACAGAGACCACAAAGGAGACTACCTCAACGTCCCTTCCCACCCTTTCCTAATCAAAATTCTACAGAAACAAGGGGACAATGAGGTTCTGTTTGCGGACAGGGTTCTGAAGTTTACGGGCTCCGGGAAGATGAAACGCTGCGTTCTGATGATCACGGATTCTGCGATTTACATCGTTGACCCTGAGGTGGACGCGCTGAAGCGGAGAATAGTGCTTGCGGCGGTGGAGAGGGTTTGTCTGAGTGAACTGAGTGATAATTTTTTCGCGGTGATTGTTCCGTCGGAGTATGATTTGCTCATGGCTAGTACTCGGAAGACGGAGATTGTCACGGTGCTGGTCGAGGCTACCAAGGCCAAGAGTGCGACGGGGTTCGAACTCGATGTCGTTTTCTCCAATAGATTTGAGTATAACGCGGCATCTGACTTGGTGAAGGAAGTTCAATTTGAGGAAGTTGAAGGTATGTGA

Predicted protein sequences of Glyma13g08460

Limit To All Plant Sequences

>Glyma13g08460.1   sequence type=predicted peptide   gene model=Glyma13g08460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPRRVQIEDPKYDDVPDADEPEETIRFKSSNSNVSDDQEPFMGIKVRRKASLHRDHKGDYLNVPSHPFLIKILQKQGDNEVLFADRVLKFTGSGKMKRCVLMITDSAIYIVDPEVDALKRRIVLAAVERVCLSELSDNFFAVIVPSEYDLLMASTRKTEIVTVLVEATKAKSATGFELDVVFSNRFEYNAASDLVKEVQFEEVEGGVKTRILRK*

>Glyma13g08460.2   sequence type=predicted peptide   gene model=Glyma13g08460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPRRVQIEDPKYDDVPDADEPEETIRFKSSNSNVSDDQEPFMGIKVRRKASLHRDHKGDYLNVPSHPFLIKILQKQGDNEVLFADRVLKFTGSGKMKRCVLMITDSAIYIVDPEVDALKRRIVLAAVERVCLSELSDNFFAVIVPSEYDLLMASTRKTEIVTVLVEATKAKSATGFELDVVFSNRFEYNAASDLVKEVQFEEVEGM*

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