SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G43960 | AT | Annotation by Michelle Graham. TAIR10: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr5:17689154-17691220 REVERSE LENGTH=391 | SoyBase | E_val: 3.00E-45 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0006913 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleocytoplasmic transport | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| PTHR10693 | Panther | RNA-BINDING RAS-GAP SH3 BINDING PROTEIN RELATED | JGI | ISS | |
| PTHR10693:SF8 | Panther | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / | JGI | ISS | |
| PF02136 | PFAM | Nuclear transport factor 2 (NTF2) domain | JGI | ISS | |
| UniRef100_G7KXF8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ras GTPase-activating protein-binding protein n=1 Tax=Medicago truncatula RepID=G7KXF8_MEDTR | SoyBase | E_val: 3.00E-112 | ISS |
| UniRef100_UPI000233F017 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F017 related cluster n=1 Tax=unknown RepID=UPI000233F017 | SoyBase | E_val: 2.00E-156 | ISS |
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Glyma13g08140 not represented in the dataset |
Glyma13g08140 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g08140.2 sequence type=CDS gene model=Glyma13g08140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTCTCAGGTTTTGTGAAGATAAAGGATGTCTGTGGGAAGCCGAAGTTTGTTCAAACTTTCTTTCTTGCTCCTCAGGAGAAGGGTTACTTTGTAATGAATGATATGTTTCATTTCATTGATGATGGAGTAACGAGCCCAAATCTGGTACCAGTGGCATCCAAAACGATTGACACACAACCACATCTTTCTGCTTCTCTTGCTGAGCCACCAGTTTCAGACTACGGCTTAGAGGAAGAAGCCAGGAAATATGTCAACTCAGTTCATATAGATGATGATCCACAGCTACAAGAAGAACTTGAAACCGAAATAGTGGTGGAGGAAACTTCCGTACAGGAGGCATCTCCACCAATTCATACCGTTGCACACATTATCCAAGAACCCCCTGTTGCTCTTGTGGAAGAGTCCTTAGAGGAGCCTCCTAAGAAAACATATGCATCTATTGTATTTTCCAAAGGGCTGCTAGTGTTGTCAGCTGCTCCAAAGCATGCTCCACATTCTTTCAAAAGTGCTCCACCTCCTTCAGAGTTGAACCATGTAGCACAGCCTGCTGTTCAGCAGTCAAGCTCTGCTTCTATGTATATTCCCGAGTCAGGGACCGAGGCAGCAGAAGGCTATAGACTAGAAGAAGATGAATTAACATCTGTCTATTTTGGAAACTTGCCTGCTAATGCTACTGAAGCGGAGATTGATCAGGAATTCAAGAATTTTGGCAGAATTAAGCCAGATGGAATATTCATTAGGGAAATTGGAGTCTGTTATGCATTTGTTGAATGTGAAGAC
>Glyma13g08140.2 sequence type=predicted peptide gene model=Glyma13g08140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVSGFVKIKDVCGKPKFVQTFFLAPQEKGYFVMNDMFHFIDDGVTSPNLVPVASKTIDTQPHLSASLAEPPVSDYGLEEEARKYVNSVHIDDDPQLQEELETEIVVEETSVQEASPPIHTVAHIIQEPPVALVEESLEEPPKKTYASIVFSKGLLVLSAAPKHAPHSFKSAPPPSELNHVAQPAVQQSSSASMYIPESGTEAAEGYRLEEDELTSVYFGNLPANATEAEIDQEFKNFGRIKPDGIFIREIGVCYAFVECED
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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