Glyma13g08070 - SoyBase

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Report for Sequence Feature Glyma13g08070

Feature Type:	gene_model
Chromosome:	Gm13
Start:	8303948
stop:	8305763
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g08070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G72220	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr1:27184388-27185629 REVERSE LENGTH=413	SoyBase	E_val: 5.00E-48	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1493	KOG	Anaphase-promoting complex (APC), subunit 11	JGI		ISS
PTHR14155	Panther	RING FINGER PROTEIN 6/12/38	JGI		ISS
PTHR14155:SF30	Panther	OS02G0692000 PROTEIN	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7JV62	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING-H2 finger protein ATL1O n=1 Tax=Medicago truncatula RepID=G7JV62_MEDTR	SoyBase	E_val: 5.00E-107	ISS
UniRef100_I1LX65	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LX65_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g08070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g08070

Paralog	Evidence	Comments
Glyma08g07470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g08070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g042300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g08070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g08070

Limit To All Plant Sequences

>Glyma13g08070.1   sequence type=CDS   gene model=Glyma13g08070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATGCTTTCTCTCTAAACATGGTGCTGCATCACAGAAAGCTTTTATTGTTTCCACCACCACCACCACCACTCTGTAGAAGTGCCTGTCCTGAGAAATTTAATGACCCTCTACCCCCACCTAACTCCCCAGATGATTATTTGACCCAAAGTCCCACCAAAAACATCAAAATCTCCAAATACTTGATCATAAGTTTCTCCATTGTAGCAACCGCTTTCATTGTCCTCAGCTTCTACGCCATCTACGCCAAATTTTTCTCTCCTCGGAACAGGTCAATACGAAGAACACTATCACGCCCAGAAACAGAACAAGATTTCTTGGACGAGGAAGAACAACAACAACATGGTCCTGTCGTTGACCACCCCATCTGGTACATCCGCACCACCGGTCTCCAACAAGCAGTCATTACCGCCATCACCGTCTGCAAATACAGAAAAGATGAAGGCTTGATTGAAGGCACCGATTGTTCCGTTTGCCTGAGCGAGTTTCAAGAAGACGAAAGTCTCAGGCTTTTGCCAAAGTGTAACCACGCTTTTCATTTACCTTGCATTGACACGTGGCTCAGATCACACACCAATTGCCCCATGTGCCGTGCTCCCATCGTCACTGACCCCACAAGGGTTCCTTCCATGGACCCTACTGCGTTTGAAGCAAGTTCTTTTGTGGAGGAGGTTTTGGAAAATAGTGTGGAAGATGCTCAAAGCAGTAGTGATGATTTGGTGAGGAATGAGGAAGAGGAAAGAGTGCAAGAAGGTGAAGTGTGTGAAAATGAGAACTTGGCTGTGACTGTGCAGCCGAGAAGATCGGTGTCTTTGGATTCTTCTTCTGCTGCTAAGATCAGTCTTGCTCTTGCAACTGTTGTGTCAGGGGATTCTCATGGGAATCATTCAAAGAGGGTTGTTGGGAATGTGAATGGGAATTTGTCAACTAAAGGTGGTTCTTCTTCTTCTTCTTCGTCTAGTTCGGTGAAGAGGTCACGATCATTCAATGCCAAACACTTGCTATCATGGTATAGCCGTAGTCAGAGAAAGCCAAATGCTCCTTTGAGAAGCTTCTGA

Predicted protein sequences of Glyma13g08070

Limit To All Plant Sequences

>Glyma13g08070.1   sequence type=predicted peptide   gene model=Glyma13g08070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYAFSLNMVLHHRKLLLFPPPPPPLCRSACPEKFNDPLPPPNSPDDYLTQSPTKNIKISKYLIISFSIVATAFIVLSFYAIYAKFFSPRNRSIRRTLSRPETEQDFLDEEEQQQHGPVVDHPIWYIRTTGLQQAVITAITVCKYRKDEGLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTDPTRVPSMDPTAFEASSFVEEVLENSVEDAQSSSDDLVRNEEEERVQEGEVCENENLAVTVQPRRSVSLDSSSAAKISLALATVVSGDSHGNHSKRVVGNVNGNLSTKGGSSSSSSSSSVKRSRSFNAKHLLSWYSRSQRKPNAPLRSF*

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