SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G60600 | AT | Annotation by Michelle Graham. TAIR10: UbiA prenyltransferase family protein | chr1:22324807-22326759 REVERSE LENGTH=382 | SoyBase | E_val: 7.00E-141 | ISS |
| GO:0009772 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem II | SoyBase | N/A | ISS |
| GO:0010103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis | SoyBase | N/A | ISS |
| GO:0010207 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosystem II assembly | SoyBase | N/A | ISS |
| GO:0010236 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plastoquinone biosynthetic process | SoyBase | N/A | ISS |
| GO:0016556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA modification | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0042372 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phylloquinone biosynthetic process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0004659 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: prenyltransferase activity | SoyBase | N/A | ISS |
| GO:0046428 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | SoyBase | N/A | ISS |
| KOG4581 | KOG | Predicted membrane protein | JGI | ISS | |
| PTHR13929 | Panther | 1,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLTRANSFERASE | JGI | ISS | |
| PF01040 | PFAM | UbiA prenyltransferase family | JGI | ISS | |
| UniRef100_Q0WUA3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic n=2 Tax=Arabidopsis thaliana RepID=MENA_ARATH | SoyBase | E_val: 3.00E-138 | ISS |
| UniRef100_UPI000233AE15 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233AE15 related cluster n=1 Tax=unknown RepID=UPI000233AE15 | SoyBase | E_val: 0 | ISS |
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Glyma13g08010 not represented in the dataset |
Glyma13g08010 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g07520 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g042800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g08010.2 sequence type=transcript gene model=Glyma13g08010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTCAAAAGGAAAGATTGAGAGAAAGTGTTACTACTTTCAGCTTCAGTTTCTCTTGTGTTTCTCAAAGTCAAGTTACTCATCTCAGTAATCATTTGCCTCCTTCTGAGAGACACACACATAGATAGATATGATAACGTTGTAATCGAGATGGCTGCCACGTGTTGCAACTTCACTCAAGCTTCTTCTAGTTTCAAGAAACTGCATGAGAACATTCAGCTGCAGAGCTACTTCACAAGGTGCCATCAAAGATCAGCGTGTAGTGTTGAAAAAGACTTCCATAGGAGATATGGAGGAAGGTTGCAAGTTGAAAGATGGCATCAATATCAGCATGTGTTATGTGCAAGAGGAGTGGAGTTGTCCCCTTCTGTCAATGAAGATGTTGGAGAGGAAAGTGAGGAGGATATTTCAAAGGAAACCTTGATTTGGAGAGCCATCAAGTTGCCAATTTACTCTGTTGCATTTGTTCCTCTCACTGTAGGCAGTGCAGCAGCTTATTTGCAGACAGGGATATTCTCAGCTAGGTGTTATTTTGTTCTCCTGGCTTCATCAGTTCTTGTTATTACCTGGCTCAATTTAAGCAATGATGTTTATGATTTTGACACTGGAGTTGACAAGAATAAAAAGGAATCAGTTGTAAACATGGTTGGTAGCCGCAAAGGAATCTTCATTGCTGCCTACTCGTGCCTTGCTCTTGGCTTCCTTGGGCTGACTTGGACTGCTGTTGTGGAAAGAAACTTACGTTCAATATTGTTTCTTGTTTGTGCAATTATTTGTGGCTATATATATCAGTGTCCACCATTTCGGTTAAGCTACCAGGGGCTAGGAGAGCCCTTGTGCTTTGCAGCATTTGGTCCTTTTGCCACTTGTGCTTTTTATTTATTACATGCCAGTGCAAGGGTGAAGAACCATTTCCCATTAAGTGGAACAGTTCTTTCAGCATCAATTCTTGTTGGCTTCACAACATCACTTATCTTGTTTTGCAGTCATTTCCATCAGGTGGAAGGAGACAAGGAGGTTGGGAAAATGTCACCTTTGGTTAGACTTGGCAATAAAAAAGGTGCAGAGGTAGTGAAAGGGGCAGTCTTTATGCTCTATGCTCTTTTGGTTGCTTTTGGTCTAATCAAGGCACTTCCTCTCACTTGTATATCCCTTTGTACATTGACCTTGCCGTTGGGAAACCTGGTAGTTAGATTTGTTGAAGACAATTACAAGGACAAAAATAAGATTTTCATGGCTAAGTACTTTTGTGTGAGGCTGCATGCTATGTTTGGAGTTGCACTGGCTTTAGGACTAGTGCTGGCTAGGAATACAAAATTTACATCATGGCCAATATTGAGTTGAAGATTGGCTTGTCGAAAGAGGAAGTAATGTAGTGTACTAAGGGGATTGCTCAAGAGGACCAAGGATGCAAGTCTGCATGGTGCAACAGCCATTAAGATTTCGGTCATGAGCAATTTTTCTGCAGGGGGTTTTGAATCAGTTCTCATTTTCTTCCCATTTCCGTGGCCAAATAAGATTGAAAGAAACTGCATGACACTGATACCAATCAAGAGTTGTGTGCAGCAAGCTTACCTCATCAATCTCAGGTCAGGAGATGGTTCCACTATCTAGGCACCTCGTTTTAACATTCTCCAATAAACCTTAGTTGATGCAACATTTGCTGCAAAGAATTTTTTGTGAAATCAGACCACATGTTGATTCTTTTATTTTTGCCAAGAATCTTTGCAAATTACAGTGGAAATTGGATTTACAACATTTGGTGTAAGTTCTTGAATGAAAATATATGGCAGCTAGCCTTGGAAAGGAGTTAAAGAGCAAAATGCTTTTATCTTTAGTAATTAATGTAAATTTCAAAATAAAAATTCTCAAACGTATATGCTTCTCCTATATTCATGTATAAGGTAAGCAAGCATTATAAAAAGTTAGAAGGAAAAGAATAGCTATTTCT
>Glyma13g08010.1 sequence type=CDS gene model=Glyma13g08010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGCCACGTGTTGCAACTTCACTCAAGCTTCTTCTAGTTTCAAGAAACTGCATGAGAACATTCAGCTGCAGAGCTACTTCACAAGGTGCCATCAAAGATCAGCGTGTAGTGTTGAAAAAGACTTCCATAGGAGATATGGAGGAAGGTTGCAAGTTGAAAGATGGCATCAATATCAGCATGTGTTATGTGCAAGAGGAGTGGAGTTGTCCCCTTCTGTCAATGAAGATGTTGGAGAGGAAAGTGAGGAGGATATTTCAAAGGAAACCTTGATTTGGAGAGCCATCAAGTTGCCAATTTACTCTGTTGCATTTGTTCCTCTCACTGTAGGCAGTGCAGCAGCTTATTTGCAGACAGGGATATTCTCAGCTAGGTGTTATTTTGTTCTCCTGGCTTCATCAGTTCTTGTTATTACCTGGCTCAATTTAAGCAATGATGTTTATGATTTTGACACTGGAGTTGACAAGAATAAAAAGGAATCAGTTGTAAACATGGTTGGTAGCCGCAAAGGAATCTTCATTGCTGCCTACTCGTGCCTTGCTCTTGGCTTCCTTGGGCTGACTTGGACTGCTGTTGTGGAAAGAAACTTACGTTCAATATTGTTTCTTGTTTGTGCAATTATTTGTGGCTATATATATCAGTGTCCACCATTTCGGTTAAGCTACCAGGGGCTAGGAGAGCCCTTGTGCTTTGCAGCATTTGGTCCTTTTGCCACTTGTGCTTTTTATTTATTACATGCCAGTGCAAGGGTGAAGAACCATTTCCCATTAAGTGGAACAGTTCTTTCAGCATCAATTCTTGTTGGCTTCACAACATCACTTATCTTGTTTTGCAGTCATTTCCATCAGGTGGAAGGAGACAAGGAGGTTGGGAAAATGTCACCTTTGGTTAGACTTGGCAATAAAAAAGGTGCAGAGGTAGTGAAAGGGGCAGTCTTTATGCTCTATGCTCTTTTGGTTGCTTTTGGTCTAATCAAGGCACTTCCTCTCACTTGTATATCCCTTTGTACATTGACCTTGCCGTTGGGAAACCTGGTAGTTAGATTTGTTGAAGACAATTACAAGGCAAGTGAATTTTCTTATAGATTTGATCCGTTGGTGTATTTCTTATAG >Glyma13g08010.2 sequence type=CDS gene model=Glyma13g08010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGCCACGTGTTGCAACTTCACTCAAGCTTCTTCTAGTTTCAAGAAACTGCATGAGAACATTCAGCTGCAGAGCTACTTCACAAGGTGCCATCAAAGATCAGCGTGTAGTGTTGAAAAAGACTTCCATAGGAGATATGGAGGAAGGTTGCAAGTTGAAAGATGGCATCAATATCAGCATGTGTTATGTGCAAGAGGAGTGGAGTTGTCCCCTTCTGTCAATGAAGATGTTGGAGAGGAAAGTGAGGAGGATATTTCAAAGGAAACCTTGATTTGGAGAGCCATCAAGTTGCCAATTTACTCTGTTGCATTTGTTCCTCTCACTGTAGGCAGTGCAGCAGCTTATTTGCAGACAGGGATATTCTCAGCTAGGTGTTATTTTGTTCTCCTGGCTTCATCAGTTCTTGTTATTACCTGGCTCAATTTAAGCAATGATGTTTATGATTTTGACACTGGAGTTGACAAGAATAAAAAGGAATCAGTTGTAAACATGGTTGGTAGCCGCAAAGGAATCTTCATTGCTGCCTACTCGTGCCTTGCTCTTGGCTTCCTTGGGCTGACTTGGACTGCTGTTGTGGAAAGAAACTTACGTTCAATATTGTTTCTTGTTTGTGCAATTATTTGTGGCTATATATATCAGTGTCCACCATTTCGGTTAAGCTACCAGGGGCTAGGAGAGCCCTTGTGCTTTGCAGCATTTGGTCCTTTTGCCACTTGTGCTTTTTATTTATTACATGCCAGTGCAAGGGTGAAGAACCATTTCCCATTAAGTGGAACAGTTCTTTCAGCATCAATTCTTGTTGGCTTCACAACATCACTTATCTTGTTTTGCAGTCATTTCCATCAGGTGGAAGGAGACAAGGAGGTTGGGAAAATGTCACCTTTGGTTAGACTTGGCAATAAAAAAGGTGCAGAGGTAGTGAAAGGGGCAGTCTTTATGCTCTATGCTCTTTTGGTTGCTTTTGGTCTAATCAAGGCACTTCCTCTCACTTGTATATCCCTTTGTACATTGACCTTGCCGTTGGGAAACCTGGTAGTTAGATTTGTTGAAGACAATTACAAGGACAAAAATAAGATTTTCATGGCTAAGTACTTTTGTGTGAGGCTGCATGCTATGTTTGGAGTTGCACTGGCTTTAGGACTAGTGCTGGCTAGGAATACAAAATTTACATCATGGCCAATATTGAGTTGA
>Glyma13g08010.1 sequence type=predicted peptide gene model=Glyma13g08010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAATCCNFTQASSSFKKLHENIQLQSYFTRCHQRSACSVEKDFHRRYGGRLQVERWHQYQHVLCARGVELSPSVNEDVGEESEEDISKETLIWRAIKLPIYSVAFVPLTVGSAAAYLQTGIFSARCYFVLLASSVLVITWLNLSNDVYDFDTGVDKNKKESVVNMVGSRKGIFIAAYSCLALGFLGLTWTAVVERNLRSILFLVCAIICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATCAFYLLHASARVKNHFPLSGTVLSASILVGFTTSLILFCSHFHQVEGDKEVGKMSPLVRLGNKKGAEVVKGAVFMLYALLVAFGLIKALPLTCISLCTLTLPLGNLVVRFVEDNYKASEFSYRFDPLVYFL* >Glyma13g08010.2 sequence type=predicted peptide gene model=Glyma13g08010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAATCCNFTQASSSFKKLHENIQLQSYFTRCHQRSACSVEKDFHRRYGGRLQVERWHQYQHVLCARGVELSPSVNEDVGEESEEDISKETLIWRAIKLPIYSVAFVPLTVGSAAAYLQTGIFSARCYFVLLASSVLVITWLNLSNDVYDFDTGVDKNKKESVVNMVGSRKGIFIAAYSCLALGFLGLTWTAVVERNLRSILFLVCAIICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATCAFYLLHASARVKNHFPLSGTVLSASILVGFTTSLILFCSHFHQVEGDKEVGKMSPLVRLGNKKGAEVVKGAVFMLYALLVAFGLIKALPLTCISLCTLTLPLGNLVVRFVEDNYKDKNKIFMAKYFCVRLHAMFGVALALGLVLARNTKFTSWPILS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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