Glyma13g07990 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g07990

Feature Type:	gene_model
Chromosome:	Gm13
Start:	8223402
stop:	8227541
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g07990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G17840	AT	Annotation by Michelle Graham. TAIR10: white-brown complex homolog protein 11 \| chr1:6142870-6145894 FORWARD LENGTH=703	SoyBase	E_val: 0	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0015908	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid transport	SoyBase	N/A	ISS
GO:0080051	GO-bp	Annotation by Michelle Graham. GO Biological Process: cutin transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009897	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: external side of plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0015245	GO-mf	Annotation by Michelle Graham. GO Molecular Function: fatty acid transporter activity	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
GO:0042626	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances	SoyBase	N/A	ISS
KOG0061	KOG	Transporter, ABC superfamily (Breast cancer resistance protein)	JGI		ISS
PTHR19241	Panther	ATP-BINDING CASSETTE TRANSPORTER	JGI		ISS
PTHR19241:SF20	Panther	ABC TRANSPORTER	JGI		ISS
PF00005	PFAM	ABC transporter	JGI		ISS
PF01061	PFAM	ABC-2 type transporter	JGI		ISS
UniRef100_B9GGB9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: White-brown-complex ABC transporter family (Fragment) n=1 Tax=Populus trichocarpa RepID=B9GGB9_POPTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233AE13	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233AE13 related cluster n=1 Tax=unknown RepID=UPI000233AE13	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g07990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g07990

Paralog	Evidence	Comments
Glyma08g07550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g07990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g043000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g07990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g07990

Limit To All Plant Sequences

>Glyma13g07990.3   sequence type=transcript   gene model=Glyma13g07990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCACACTCCCACTAGCATAAACACACACACACACACACACACACACTCACACAAAATTCACAATGAGCTGTCTTCTTCAACCTAATGCTAGTGATTGTGAACCAAACAATAGCTCTAAAATTCTGCCACCCCTTTCAGAATTTGAGACCTCATTTGAGGTAGAAAAGATCAAATCAGTAGAAACTGGTAAAGATGGCGAGGAAGATCAAGAGGAGGGTGTTTTCTTGACGTGGGAGGATTTGTGGGTGACAGTTTCAAATGGAAAAAATGGAAGGAAGCCAATACTTCAGGGTCTAAAAGGCTATGCCAAACCAGGGAAACTATTGGCAATAATGGGTCCTTCTGGTTGTGGCAAGTCAACACTTCTTGATGCTTTAGCAGGAAGATTAGGTTCAAAGACAAAGCAAACAGGGAAGATCTTAATCAATGGAAGGAAACAAGCACTAGCTTATGGAGCATCTGCATATGTAACAGAAGATGATACTATTTTGACAACTCTAACAGTCAAAGAAGCTGTATACTACTCAGCTTACCTTCAATTGCCAGATTCCATGTCCAAGTCAGAAAAACAGGAGAGAGCTGATTTCACAATAAGAGAAATGGGTCTGCATGATGCCATTAACACCAGAATTGGAGGGTGGGGTTCTAAAGGCGCTAGTGGCGGGCAAAAGAGGAGAGTTAGCATTTGCATTGAGATCTTAACACATCCAAGGCTTCTCTTCCTTGATGAACCAACTAGTGGACTTGATAGCGCAGCTTCTTATCATGTTATGAGTAGAATATCCAACTTGAACAAAAAGGATGGCATTCAAAGGACTATTATTGCATCAATCCATCAGCCAAGTAATGAAATTTTTCAACTTTTCCACAACCTTTGCCTTCTGTCTTCTGGGAAAACAGTTTACTTTGGACCTACTTCTGCTGCAAATAAGTTTTTCTCATCAAATGGTTTTCCCTGCCCAAGTCTTCATAGTCCTTCAGATCACTTCGTAAAAACCATTAACAAGGATTTTGAACAGGACCCTGAGAAAGGATTAGCCGGAGGGCTAAGTACAGAAGAAGCAATTCATGTTCTTGCTAAATCATATGATTCATCTAAGATTTGTCACCAAGTTCAAAAGGAAATAGCCCAAACAAAGAAAAGGGACTCGGACACAATGGATGAGAAATGCCATGCTGACTTTTTCACCCAATGTCTCATTCTTACAAGAAGATCTTTCGTGAACATGTATCGCGAAGTAGGTTATTACTGGTTACGCCTACTTATCTATGGTGCCTTGGCTTTAAGTCTTGGTACCATGTTCTTTGACATTGGTTCAAGCAGTGAATCAATTCAGGCCAGAGGTTCATTGCTTGTGTTTGTTGTTACATTCCTGACCTTCATAACTGTTGGAGGGTTCCCTTCTTTTGTGGAGGAAATGAAGGTGTTTGAAAGAGAAAGACTCAATGGGCATTATGGTGTCACTGCATTTACCATCGGCAACACATTATCCTCTGTTCCATTTTTGCTGTTGATGTCATTGATCCCAGGAGCACTGGTTTATTACCTAGTTGGACTTCACCAAGGACACGAACATTTTGTGTACTTTATATTTATGCTTTTCACTTCAGTCTTCTTGGTCGAGGGTCTCATGATGATTGTTGCGAGCATGGTTCCCAATTTCTTGATGGGTATAATCGTTGGTTCTGGAATTCTGGGCATAATGATGTTAGATGGTGGATTCTATAGGCTTCCAAGTGACATTCCTAAGCCCTTTTGGAGATACCCTTTGCACTACATTTCCTTCCACAAGTATGCCTACCAAGGATTGTTCAAGAATGAGTTTCAAGGTCTAACATTCCCTAGCAATCAAGTTGGAGCACACATGACAATTCATGGTGAACATATTCTGAGACACATATGGCAAATGGAAGTGAATTATTCAAAGTGGGTGGATGTTGGTATCTTGGTAGGAATGGCAGTACTATATCGAATTCTATTTTTGGTTATCATCAAGAGCTTTGAGAAGGTGAAGCCTATTTCCTCAGCATTAAATTGTCCCCAAACAAACTTTGGGTTAACCAAAGTGACAAGGAGCAGTGAGATTGATTAGCTTGTAATCCAAGGCAGAGTAATCATATATGGTTGAGATATCCCATTAAGAGCTGCAGAATTGTGGTGTGGCAATATGTTATGTACTAGGCATATCAATTTTACCAAGGAATCTGAAGTTTACAAGATGGTGGAATTTTATGAATTAAGCTTGATTATATACATGAGATTTGTAAATATTTATTTGTGATCCCTGTGCATGTTGAAGAATATTATAAAGTTTGTTGTGAGATAAACGTTGAGCAATAATTGCCATTGTATGATTCACAAAACTATCTAACATTAGGAAAGGCAGAAGCATTCTTTTTCTGTGTACCAGTCCAGTTTTTGGGACTTTTTGTGTATGTTTGTGATGTGTATTTCTTGAAATTGTAAGTTTTTTT

Coding sequences of Glyma13g07990

Limit To All Plant Sequences

>Glyma13g07990.2   sequence type=CDS   gene model=Glyma13g07990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTGTCTTCTTCAACCTAATGCTAGTGATTGTGAACCAAACAATAGCTCTAAAATTCTGCCACCCCTTTCAGAATTTGAGACCTCATTTGAGGTAGAAAAGATCAAATCAGTAGAAACTGGTAAAGATGGCGAGGAAGATCAAGAGGAGGGTGTTTTCTTGACGTGGGAGGATTTGTGGGTGACAGTTTCAAATGGAAAAAATGGAAGGAAGCCAATACTTCAGGGTCTAAAAGGCTATGCCAAACCAGGGAAACTATTGGCAATAATGGGTCCTTCTGGTTGTGGCAAGTCAACACTTCTTGATGCTTTAGCAGGAAGATTAGGTTCAAAGACAAAGCAAACAGGGAAGATCTTAATCAATGGAAGGAAACAAGCACTAGCTTATGGAGCATCTGCATATGTAACAGAAGATGATACTATTTTGACAACTCTAACAGTCAAAGAAGCTGTATACTACTCAGCTTACCTTCAATTGCCAGATTCCATGTCCAAGTCAGAAAAACAGGAGAGAGCTGATTTCACAATAAGAGAAATGGGTCTGCATGATGCCATTAACACCAGAATTGGAGGGTGGGGTTCTAAAGGCGCTAGTGGCGGGCAAAAGAGGAGAGTTAGCATTTGCATTGAGATCTTAACACATCCAAGGCTTCTCTTCCTTGATGAACCAACTAGTGGACTTGATAGCGCAGCTTCTTATCATGTTATGAGTAGAATATCCAACTTGAACAAAAAGGATGGCATTCAAAGGACTATTATTGCATCAATCCATCAGCCAAGTAATGAAATTTTTCAACTTTTCCACAACCTTTGCCTTCTGTCTTCTGGGAAAACAGTTTACTTTGGACCTACTTCTGCTGCAAATAAGTTTTTCTCATCAAATGGTTTTCCCTGCCCAAGTCTTCATAGTCCTTCAGATCACTTCGTAAAAACCATTAACAAGGATTTTGAACAGTTTTCAGCTGGCTCTATCAACCGATTCACCCTTCATTTGCAGGACCCTGAGAAAGGATTAGCCGGAGGGCTAAGTACAGAAGAAGCAATTCATGTTCTTGCTAAATCATATGATTCATCTAAGATTTGTCACCAAGTTCAAAAGGAAATAGCCCAAACAAAGAAAAGGGACTCGGACACAATGGATGAGAAATGCCATGCTGACTTTTTCACCCAATGTCTCATTCTTACAAGAAGATCTTTCGTGAACATGTATCGCGAAGTAGGTTATTACTGGTTACGCCTACTTATCTATGGTGCCTTGGCTTTAAGTCTTGGTACCATGTTCTTTGACATTGGTTCAAGCAGTGAATCAATTCAGGCCAGAGGTTCATTGCTTGTGTTTGTTGTTACATTCCTGACCTTCATAACTGTTGGAGGGTTCCCTTCTTTTGTGGAGGAAATGAAGGTGTTTGAAAGAGAAAGACTCAATGGGCATTATGGTGTCACTGCATTTACCATCGGCAACACATTATCCTCTGTTCCATTTTTGCTGTTGATGTCATTGATCCCAGGAGCACTGGTTTATTACCTAGTTGGACTTCACCAAGGACACGAACATTTTGTGTACTTTATATTTATGCTTTTCACTTCAGTCTTCTTGGTCGAGGGTCTCATGATGATTGTTGCGAGCATGGTTCCCAATTTCTTGATGGGTATAATCGTTGGTTCTGGAATTCTGGGCATAATGATGTTAGATGGTGGATTCTATAGGCTTCCAAGTGACATTCCTAAGCCCTTTTGGAGATACCCTTTGCACTACATTTCCTTCCACAAGTATGCCTACCAAGGATTGTTCAAGAATGAGTTTCAAGGTCTAACATTCCCTAGCAATCAAGTTGGAGCACACATGACAATTCATGGTGAACATATTCTGAGACACATATGGCAAATGGAAGTGAATTATTCAAAGTGGGTGGATGTTGGTATCTTGGTAGGAATGGCAGTACTATATCGAATTCTATTTTTGGTTATCATCAAGAGCTTTGAGAAGGTGAAGCCTATTTCCTCAGCATTAAATTGTCCCCAAACAAACTTTGGGTTAACCAAAGTGACAAGGAGCAGTGAGATTGATTAG

>Glyma13g07990.3   sequence type=CDS   gene model=Glyma13g07990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTGTCTTCTTCAACCTAATGCTAGTGATTGTGAACCAAACAATAGCTCTAAAATTCTGCCACCCCTTTCAGAATTTGAGACCTCATTTGAGGTAGAAAAGATCAAATCAGTAGAAACTGGTAAAGATGGCGAGGAAGATCAAGAGGAGGGTGTTTTCTTGACGTGGGAGGATTTGTGGGTGACAGTTTCAAATGGAAAAAATGGAAGGAAGCCAATACTTCAGGGTCTAAAAGGCTATGCCAAACCAGGGAAACTATTGGCAATAATGGGTCCTTCTGGTTGTGGCAAGTCAACACTTCTTGATGCTTTAGCAGGAAGATTAGGTTCAAAGACAAAGCAAACAGGGAAGATCTTAATCAATGGAAGGAAACAAGCACTAGCTTATGGAGCATCTGCATATGTAACAGAAGATGATACTATTTTGACAACTCTAACAGTCAAAGAAGCTGTATACTACTCAGCTTACCTTCAATTGCCAGATTCCATGTCCAAGTCAGAAAAACAGGAGAGAGCTGATTTCACAATAAGAGAAATGGGTCTGCATGATGCCATTAACACCAGAATTGGAGGGTGGGGTTCTAAAGGCGCTAGTGGCGGGCAAAAGAGGAGAGTTAGCATTTGCATTGAGATCTTAACACATCCAAGGCTTCTCTTCCTTGATGAACCAACTAGTGGACTTGATAGCGCAGCTTCTTATCATGTTATGAGTAGAATATCCAACTTGAACAAAAAGGATGGCATTCAAAGGACTATTATTGCATCAATCCATCAGCCAAGTAATGAAATTTTTCAACTTTTCCACAACCTTTGCCTTCTGTCTTCTGGGAAAACAGTTTACTTTGGACCTACTTCTGCTGCAAATAAGTTTTTCTCATCAAATGGTTTTCCCTGCCCAAGTCTTCATAGTCCTTCAGATCACTTCGTAAAAACCATTAACAAGGATTTTGAACAGGACCCTGAGAAAGGATTAGCCGGAGGGCTAAGTACAGAAGAAGCAATTCATGTTCTTGCTAAATCATATGATTCATCTAAGATTTGTCACCAAGTTCAAAAGGAAATAGCCCAAACAAAGAAAAGGGACTCGGACACAATGGATGAGAAATGCCATGCTGACTTTTTCACCCAATGTCTCATTCTTACAAGAAGATCTTTCGTGAACATGTATCGCGAAGTAGGTTATTACTGGTTACGCCTACTTATCTATGGTGCCTTGGCTTTAAGTCTTGGTACCATGTTCTTTGACATTGGTTCAAGCAGTGAATCAATTCAGGCCAGAGGTTCATTGCTTGTGTTTGTTGTTACATTCCTGACCTTCATAACTGTTGGAGGGTTCCCTTCTTTTGTGGAGGAAATGAAGGTGTTTGAAAGAGAAAGACTCAATGGGCATTATGGTGTCACTGCATTTACCATCGGCAACACATTATCCTCTGTTCCATTTTTGCTGTTGATGTCATTGATCCCAGGAGCACTGGTTTATTACCTAGTTGGACTTCACCAAGGACACGAACATTTTGTGTACTTTATATTTATGCTTTTCACTTCAGTCTTCTTGGTCGAGGGTCTCATGATGATTGTTGCGAGCATGGTTCCCAATTTCTTGATGGGTATAATCGTTGGTTCTGGAATTCTGGGCATAATGATGTTAGATGGTGGATTCTATAGGCTTCCAAGTGACATTCCTAAGCCCTTTTGGAGATACCCTTTGCACTACATTTCCTTCCACAAGTATGCCTACCAAGGATTGTTCAAGAATGAGTTTCAAGGTCTAACATTCCCTAGCAATCAAGTTGGAGCACACATGACAATTCATGGTGAACATATTCTGAGACACATATGGCAAATGGAAGTGAATTATTCAAAGTGGGTGGATGTTGGTATCTTGGTAGGAATGGCAGTACTATATCGAATTCTATTTTTGGTTATCATCAAGAGCTTTGAGAAGGTGAAGCCTATTTCCTCAGCATTAAATTGTCCCCAAACAAACTTTGGGTTAACCAAAGTGACAAGGAGCAGTGAGATTGATTAG

Predicted protein sequences of Glyma13g07990

Limit To All Plant Sequences

>Glyma13g07990.2   sequence type=predicted peptide   gene model=Glyma13g07990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSCLLQPNASDCEPNNSSKILPPLSEFETSFEVEKIKSVETGKDGEEDQEEGVFLTWEDLWVTVSNGKNGRKPILQGLKGYAKPGKLLAIMGPSGCGKSTLLDALAGRLGSKTKQTGKILINGRKQALAYGASAYVTEDDTILTTLTVKEAVYYSAYLQLPDSMSKSEKQERADFTIREMGLHDAINTRIGGWGSKGASGGQKRRVSICIEILTHPRLLFLDEPTSGLDSAASYHVMSRISNLNKKDGIQRTIIASIHQPSNEIFQLFHNLCLLSSGKTVYFGPTSAANKFFSSNGFPCPSLHSPSDHFVKTINKDFEQFSAGSINRFTLHLQDPEKGLAGGLSTEEAIHVLAKSYDSSKICHQVQKEIAQTKKRDSDTMDEKCHADFFTQCLILTRRSFVNMYREVGYYWLRLLIYGALALSLGTMFFDIGSSSESIQARGSLLVFVVTFLTFITVGGFPSFVEEMKVFERERLNGHYGVTAFTIGNTLSSVPFLLLMSLIPGALVYYLVGLHQGHEHFVYFIFMLFTSVFLVEGLMMIVASMVPNFLMGIIVGSGILGIMMLDGGFYRLPSDIPKPFWRYPLHYISFHKYAYQGLFKNEFQGLTFPSNQVGAHMTIHGEHILRHIWQMEVNYSKWVDVGILVGMAVLYRILFLVIIKSFEKVKPISSALNCPQTNFGLTKVTRSSEID*

>Glyma13g07990.3   sequence type=predicted peptide   gene model=Glyma13g07990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSCLLQPNASDCEPNNSSKILPPLSEFETSFEVEKIKSVETGKDGEEDQEEGVFLTWEDLWVTVSNGKNGRKPILQGLKGYAKPGKLLAIMGPSGCGKSTLLDALAGRLGSKTKQTGKILINGRKQALAYGASAYVTEDDTILTTLTVKEAVYYSAYLQLPDSMSKSEKQERADFTIREMGLHDAINTRIGGWGSKGASGGQKRRVSICIEILTHPRLLFLDEPTSGLDSAASYHVMSRISNLNKKDGIQRTIIASIHQPSNEIFQLFHNLCLLSSGKTVYFGPTSAANKFFSSNGFPCPSLHSPSDHFVKTINKDFEQDPEKGLAGGLSTEEAIHVLAKSYDSSKICHQVQKEIAQTKKRDSDTMDEKCHADFFTQCLILTRRSFVNMYREVGYYWLRLLIYGALALSLGTMFFDIGSSSESIQARGSLLVFVVTFLTFITVGGFPSFVEEMKVFERERLNGHYGVTAFTIGNTLSSVPFLLLMSLIPGALVYYLVGLHQGHEHFVYFIFMLFTSVFLVEGLMMIVASMVPNFLMGIIVGSGILGIMMLDGGFYRLPSDIPKPFWRYPLHYISFHKYAYQGLFKNEFQGLTFPSNQVGAHMTIHGEHILRHIWQMEVNYSKWVDVGILVGMAVLYRILFLVIIKSFEKVKPISSALNCPQTNFGLTKVTRSSEID*

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