Glyma13g07880 - SoyBase

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Report for Sequence Feature Glyma13g07880

Feature Type:	gene_model
Chromosome:	Gm13
Start:	8094487
stop:	8096870
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g07880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25150	AT	Annotation by Michelle Graham. TAIR10: HXXXD-type acyl-transferase family protein \| chr2:10702582-10704266 REVERSE LENGTH=461	SoyBase	E_val: 3.00E-103	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0016747	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups	SoyBase	N/A	ISS
PF02458	PFAM	Transferase family	JGI		ISS
UniRef100_E5RUB1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acyltransferase n=1 Tax=Lupinus angustifolius RepID=E5RUB1_LUPAN	SoyBase	E_val: 5.00E-174	ISS
UniRef100_I1LX50	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LX50_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g07880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g07880

Paralog	Evidence	Comments
Glyma08g07610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g07880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g044100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g07880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g07880

Limit To All Plant Sequences

>Glyma13g07880.1   sequence type=CDS   gene model=Glyma13g07880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACACCAGAATGCAATCCTAACTGTTGAAAACAAAGATGTTACATTCATCAAACCTTCAAAGCCCACTCCTACCACCATTCTTTCACTGTCTAGCATTGACAATGCTCCCGATAACGATTTCTTCATGCAAAGCCTTCATGTATACCGATGGGAAAATCACAATTCCCCTAATACTCCAAAACTTGGCCCTGCAAAATTGATCAAAGTGGCACTCTCGGAGGCTCTCTTTTACTATTATCCTCTTGCAGGAAAGTTAGTAAGACACGCTGATGGAAAATTCAGAATCAACTGCAACTCCGAAGGAGTTCCATTCATAGAGGCTATTTGTAACTGCAGCCTCTCATCTATTCATTACCTAGATTGCAACGACGTCGAAATCGGAAAACATTTTGCTATCGATTTTCCTTCGGAAGATGAATTTGGAAACCAATACCCTTTGGTTTTCAAGGTGACTAAATTCCTCTGTGGGGGTTTCACATTAGTGATGGGCTTGTCCCACGCTATTTTAGACGGAACTGGGCAATCTCAGTTCTTACGCGCAGTTGCTGAACTTGCAAGTGGAAAAGCTGAGCCCTCTGTGAAGCCCGTGTGGGAAAGAGAAAGACTAGTGGGAACATATACAAGTCAACCAATGCAAAATCCCATGGACAATGCTTCTTTTGCAGTTTCACCATTTCTACCAACCACAGATTATTCGCATGAATGCTCGAAGGTGGACAGTGAGAGCATAACAAGACTCAAGACGAGTTTGATGAAAGAAAGTGACAACAAAGAAAGTATGAAGAAAAAAGGGTTCACAACTTTTGAAACCCTAGCTGCGTACATCTGGAGGTCAAGAACCAGAGCCATGAAACTGAGTTACGATAGAAAAACATTGCTGGTAATGACAGTAGGGTTGAGACCACACTTGCTGAATCCTTTGCCTGATGGATATTACGGAAACACCATCATGGATGCATTTGTTACGTTAACAGTGAGGGAGCTGAACGAACTACCACTATTGGAGGTTGTGAAACTCATCAGAGAGAGCAAAGAAGTTGCTTTTAGCGATGACTATATCAGACACTCAATCGACAGTATGCATACGAAGCCAATGGAATATTATTATGAAAGAGGTGGAATAACGTTTATAACGGATTGGAGACATTTGGGTTTGTTGGAAAAGGTTGATTTTGGGTGGAAGGAGCCAGTGAATACTATGCCAGTCCCTTCGGACATGTATGGATTAATAGGTTTGTGCAATATCTTTCTTCCAAGTAATTTGGATCCTTCAATGATTGGAGGAGCTAGGGTTTACGCCTCCCTGCCTAGTGCTGCCATGCCCAAGTTCAAGGAAGAGATGAAAGCTCTTACCAGTGTCCATAAGAGAAATTCGAAAATTTAA

Predicted protein sequences of Glyma13g07880

Limit To All Plant Sequences

>Glyma13g07880.1   sequence type=predicted peptide   gene model=Glyma13g07880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHQNAILTVENKDVTFIKPSKPTPTTILSLSSIDNAPDNDFFMQSLHVYRWENHNSPNTPKLGPAKLIKVALSEALFYYYPLAGKLVRHADGKFRINCNSEGVPFIEAICNCSLSSIHYLDCNDVEIGKHFAIDFPSEDEFGNQYPLVFKVTKFLCGGFTLVMGLSHAILDGTGQSQFLRAVAELASGKAEPSVKPVWERERLVGTYTSQPMQNPMDNASFAVSPFLPTTDYSHECSKVDSESITRLKTSLMKESDNKESMKKKGFTTFETLAAYIWRSRTRAMKLSYDRKTLLVMTVGLRPHLLNPLPDGYYGNTIMDAFVTLTVRELNELPLLEVVKLIRESKEVAFSDDYIRHSIDSMHTKPMEYYYERGGITFITDWRHLGLLEKVDFGWKEPVNTMPVPSDMYGLIGLCNIFLPSNLDPSMIGGARVYASLPSAAMPKFKEEMKALTSVHKRNSKI*

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