SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G64240 | AT | Annotation by Michelle Graham. TAIR10: metacaspase 3 | chr5:25695836-25697249 FORWARD LENGTH=362 | SoyBase | E_val: 1.00E-81 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004197 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cysteine-type endopeptidase activity | SoyBase | N/A | ISS |
| KOG1546 | KOG | Metacaspase involved in regulation of apoptosis | JGI | ISS | |
| PF00656 | PFAM | Caspase domain | JGI | ISS | |
| UniRef100_B9SIP2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Caspase, putative n=1 Tax=Ricinus communis RepID=B9SIP2_RICCO | SoyBase | E_val: 1.00E-88 | ISS |
| UniRef100_UPI000233AE0B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233AE0B related cluster n=1 Tax=unknown RepID=UPI000233AE0B | SoyBase | E_val: 0 | ISS |
|
Glyma13g07861 not represented in the dataset |
Glyma13g07861 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g07630 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g044300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g07861.1 sequence type=CDS gene model=Glyma13g07861 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAAGTAGACAAGTAAGATGTAACCAGTGTGGATCACTATTAATGGTTTCAGCAGAGACTCGTGTCGTTGAGTGCACAGTGTGCCATGGCATGACCCAGATTCGACCCTCCATTACAGGTGCATGGAGTGAAGTAGTCTACAACTCCTTTCATCAGTTTGGAGGTCGTCTCAGAAGCTTTGCAAATACCATAATGCCTGGTTCTGGTTCAGTTAACAATAGCAATCCGCGGGGTTATTATGGGACACCTCAAATTGCGTATTATCCTCCACCTCCTCAGTCACTAAGGCCATCATACAATGCATATGGCCCAAAGCGGGCTGTGCTATGTGGAATTTGCTATCATGGGAAGGATAACCAGCTAAACGGCACCGTGAATGATGTTAAAAACATGAATATCTTTCTGGTTAAGGAGTGTGGGTTTCCTAGGGAATCCATTCTCATTCTCACAGATGATATGGAGGAGAGAAACCCACAAAAATTCCCGACGAAATATAACATTCTGAAGGCCATGAGGTGGCTAATTGAGGGTAGCCAGTCGGGGGATTCATTGGTGTTCCAGTTCTCAGGACATGGTTGTCAGGAACTGGATACGAATGGGGATTTCGATGAGCTTGATGAGCGTGACGAAGCAATATGTCCGGTTGATTGGGAAAAGCAGGGAATTATACTCGATGATGATATTAATGCTGCAATTGTTAGGCCACTACCATACGGTGCTAAACTTCATGCCATTATTGATTCATGCAATAGTGGCACTGTCCTTGATTTAGCTTATGTGTGGAGCCAGAGGGACACATGGGATTATCAATATGGAGGTCCTGATAAAGACACAAGTGGAGGGCTAGCAATTTGCATTTCAGGTTGTGGCGATTATCAATCGTCCAAAGAAATCCCTGTCTTAAGTGGTGGTGGCGGCGGCAATGCGGTCACTGGCGTTTTTACTTATAGTTTCATCTATACCATGCTAAATGAACCAGCTGGACTAAGTTATGGTGGCTTGCTCAGTTCCATGCGTTCAACCATCCGTGGGATGCTAAATAACCCAAATGCTTCGCTGTTTAATACAGATTTTACCTTGGCCCCAAGACAGGATTTGCAGAAGCCACAACTATCCTCTTCCATGGAGTTTGACGTGTATACAGCCCGGGTTGAACTGTGA
>Glyma13g07861.1 sequence type=predicted peptide gene model=Glyma13g07861 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASRQVRCNQCGSLLMVSAETRVVECTVCHGMTQIRPSITGAWSEVVYNSFHQFGGRLRSFANTIMPGSGSVNNSNPRGYYGTPQIAYYPPPPQSLRPSYNAYGPKRAVLCGICYHGKDNQLNGTVNDVKNMNIFLVKECGFPRESILILTDDMEERNPQKFPTKYNILKAMRWLIEGSQSGDSLVFQFSGHGCQELDTNGDFDELDERDEAICPVDWEKQGIILDDDINAAIVRPLPYGAKLHAIIDSCNSGTVLDLAYVWSQRDTWDYQYGGPDKDTSGGLAICISGCGDYQSSKEIPVLSGGGGGNAVTGVFTYSFIYTMLNEPAGLSYGGLLSSMRSTIRGMLNNPNASLFNTDFTLAPRQDLQKPQLSSSMEFDVYTARVEL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
