Glyma13g07560 - SoyBase

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Report for Sequence Feature Glyma13g07560

Feature Type:	gene_model
Chromosome:	Gm13
Start:	7752199
stop:	7762646
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g07560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G38460	AT	Annotation by Michelle Graham. TAIR10: ALG6, ALG8 glycosyltransferase family \| chr5:15398592-15400987 REVERSE LENGTH=533	SoyBase	E_val: 0	ISS
GO:0005789	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
KOG2575	KOG	Glucosyltransferase - Alg6p	JGI		ISS
PTHR12413	Panther	DOLICHYL GLYCOSYLTRANSFERASE	JGI		ISS
PF03155	PFAM	ALG6, ALG8 glycosyltransferase family	JGI		ISS
UniRef100_I1LX18	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LX18_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9FF17	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase n=1 Tax=Arabidopsis thaliana RepID=ALG6_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g07560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g07560

Paralog	Evidence	Comments
Glyma19g06200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g07560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g046500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g07560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g07560

Limit To All Plant Sequences

>Glyma13g07560.1   sequence type=CDS   gene model=Glyma13g07560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAAGGAAAATAAGGTGAAGGACACTGCAAGTGATGACGGTTATTGTTGGTGGTGGTTGGTTCAGAAAGGAACAACAGCTGTATTCATCACTGTTGGGTTGTTTGCATTGTTGGTCCGTGTGGCTGTGTCACTGCACCCTTACTCCGGCGCTGGCAACCCTCCGAAATTTGGGGACTATGAGGCTCAGAGACATTGGATGGAGATCACCATTAACCTTCCAATTAAGGAATGGTATAGGAACAGCTCCAACAATGATTTGAGATATTGGGGACTTGACTACCCGCCTCTGACCGCGTACCAGAGTTTCATCCATGGGCTTTTTCTTAAATTCTTCCACCCTGACTCCGTTGCTCCTTTCGCTTCCAGAGGTCATGAGTCCTATCTTGGAAAACTACTCATGAGGTGGACAGTGTTATCATCTGATGCCCTGATATTCTTTCCAGCTGCCCTGTACTTTATTATTGTTTATTACAATCAATCTTCAAGGACCCGTAAAAGTGAATTAGCATGGCATACTGCTGTGCTATTGTTAAGCCCATGTTTGATCTTAATTGATCATGGCCATTTTCAGTACAACTGCATCAGCTTGGGCTTTACCATTGGTGCTGTTGCTGCTATCCTCTCTGGGAATGATCTTGTGGCTTCTGTTCTTTATTGTCTAGCTCTAAATCATAAACAGATGAGTGCATATTTTGCACCTTCTTTTTTCAGCCATCTCCTTGGCAAATGCTTGAGGCGTAAATATCCAATCCTTGAGGTGTCAAAACTGGGGTTGTTGGTTTTAGGAACATTTGCAGCCGTGTGGTGGCCTTATCTTTATTCAACACAATCCATTTTGGAGGTCCTCTCCCGTCTTGCTCCATTTGAAAGGGGAATATTTGAGGATTATGTGGCCAACTTTTGGTGTGCCTCTTCAATTCTCATCAAGTGGAAGAGATTGTTTACAACAGAGTCTCTGAAGCTTCTCAGCCTCACTGCAACAGTTATAACCTGTCTTCCTTCAATGGTTCAACAAATAAAGTCTCCTAGCAAACGAGGTTTCCTTTATGCGCTGCTGAACAGTTCTTTCTCATTTTACTTGTTTTCTTTTCAAGTGCATGAGAAGTCTATTTTGCTGCCACTTCTTCCAGCAACCCTGCTGGCTGTTGAAGAGCCTTTTATTTTTAGGTGGTTCACGCAATTTGCCATGCTCTCCATGTTTCCTCTGATATGTCGCGACAACTTGGTTGTTCCATATTTGGCTTTACTTGCTCTCTTTGTCCTGATAATGAATGCACCTGGCCAACACAGAGTTAGAGAGAGTAATTATTTGGGCTCGGCAACCATGTTCCTTATTTTATGTTGCTATTTTGTTCTTCACATAGTTTACTTGACCATGCATCCTCCTGAGAAGTATCCTTTCCTTTTTGAAGCAATAATTATGAATCTGTGCTTCTCTCAGTTTGTTCTTGTAACTCTTGGCTGCAATATAAAGCAGTGGCTGTTAAATAGACCTGCCAAATTAGAAGAAACAGAAAAGAAGCAAATTTGA

Predicted protein sequences of Glyma13g07560

Limit To All Plant Sequences

>Glyma13g07560.1   sequence type=predicted peptide   gene model=Glyma13g07560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKENKVKDTASDDGYCWWWLVQKGTTAVFITVGLFALLVRVAVSLHPYSGAGNPPKFGDYEAQRHWMEITINLPIKEWYRNSSNNDLRYWGLDYPPLTAYQSFIHGLFLKFFHPDSVAPFASRGHESYLGKLLMRWTVLSSDALIFFPAALYFIIVYYNQSSRTRKSELAWHTAVLLLSPCLILIDHGHFQYNCISLGFTIGAVAAILSGNDLVASVLYCLALNHKQMSAYFAPSFFSHLLGKCLRRKYPILEVSKLGLLVLGTFAAVWWPYLYSTQSILEVLSRLAPFERGIFEDYVANFWCASSILIKWKRLFTTESLKLLSLTATVITCLPSMVQQIKSPSKRGFLYALLNSSFSFYLFSFQVHEKSILLPLLPATLLAVEEPFIFRWFTQFAMLSMFPLICRDNLVVPYLALLALFVLIMNAPGQHRVRESNYLGSATMFLILCCYFVLHIVYLTMHPPEKYPFLFEAIIMNLCFSQFVLVTLGCNIKQWLLNRPAKLEETEKKQI*

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