SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G38530 | AT | Annotation by Michelle Graham. TAIR10: tryptophan synthase beta type 2 | chr5:15424097-15426294 FORWARD LENGTH=506 | SoyBase | E_val: 0 | ISS |
| GO:0000162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tryptophan biosynthetic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004834 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: tryptophan synthase activity | SoyBase | N/A | ISS |
| GO:0030170 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding | SoyBase | N/A | ISS |
| GO:0042803 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity | SoyBase | N/A | ISS |
| GO:0052684 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity | SoyBase | N/A | ISS |
| KOG1395 | KOG | Tryptophan synthase beta chain | JGI | ISS | |
| PTHR10314 | Panther | PYRIDOXAL-5-PHOSPHATE DEPENDENT BETA FAMILY | JGI | ISS | |
| PTHR10314:SF21 | Panther | TRYPTOPHAN SYNTHASE BETA CHAIN | JGI | ISS | |
| PF00291 | PFAM | Pyridoxal-phosphate dependent enzyme | JGI | ISS | |
| UniRef100_I1LWZ0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LWZ0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9FFW8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Tryptophan synthase beta chain n=1 Tax=Arabidopsis thaliana RepID=Q9FFW8_ARATH | SoyBase | E_val: 0 | ISS |
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Glyma13g07130 not represented in the dataset |
Glyma13g07130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g05630 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g049500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g07130.1 sequence type=CDS gene model=Glyma13g07130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGCTCACTGTGTTTTCCCTGTTAATGCACTTCCTACTCCTTCACCATGTTTCCACTCCAAAGTTGGAAAGCAATGGCCTCAGGGATTTGCCTTGAGTGTGAGGCCAACGAATCCGAAGAGGCTTTCAAGTGCCTGCAAAGTGAGAGCAACTTTGGGTGCTTCTGATAAATCAATTGGAATTCCCAACCAATGGTACAATGTAATTGCAGATCTTCCAGTGAAACCACCTCCACCATTGCATCCCAAGACTTATGAACCAATCAAACCGGATGACTTGTCACCCCTTTTTCCTGATGAGTTAATCAGACAAGAGATCGCCAGTGACAGATTCATAGACATACCAGATGAAGTTCTTGATGTTTACAAGCTTTGGCGCCCGACCCCTCTCATTAGAGCCAAGAGGCTGGAAAAGCTTCTTGATACGCCGGCTAGGATTTACTACAAGTATGAAGGTGTAAGCCCCGCTGGATCACACAAACCAAACTCTGCTGTTCCACAAGCCTGGTATAATTTACAAGCAGGTGTCAAGAATGTTGTGACAGAAACTGGTGCTGGACAGTGGGGAAGTGCATTGGCCTTTGCGTGCAGCATATTTGGTCTTGGCTGTGAGGTGTGGCAAGTACGTGCTTCTTATGATTCAAAACCATATCGGAGATTGATGATGCAAACATGGGGTGCAAAGGTACACCCATCTCCATCTATGATTACTGAGGCAGGTCGGAGAATGCTTCAAGAGGATCCATCAAGCCCAGGGAGTTTAGGCATAGCCATATCAGAAGCTGTGGAGGTTGCTGCTAAAAATGCTGATACCAAGTACTGCTTGGGGAGTGTACTCAATCATGTTTTACTCCACCAGAGTGTTATAGGAGAAGAGTGCATCAAACAAATGGAAGCTATTGGGGAAACCCCAGATGTCATTATAGGATGTACTGGTGGTGGCTCCAACTTTGCAGGACTTAGTTTCCCGTTCCTTCGAGAGAAGCTCAATAAAAAAATCAATCCTGTTATAAGAGCGGTTGAACCTGCAGCATGTCCTTCATTAACAAAAGGGGTATATACTTATGATTATGGTGATACAGCAGGGATGACTCCATTGATGAAAATGCACACACTTGGACACGACTTTGTTCCGGATCCAATTCATGCTGGGGGTTTGCGTTACCACGGTATGGCACCATTGATCTCACATGTTTATGACTTGGGTTTAATGGAAGCAATTGCAATTCCACAAACAGAATGTTTTCAAGGGGCTATACAGTTTGCCAGGTCTGAAGGGTTGATACCAGCTCCTGAACCAACTCATGCCATAGCTGCAACCATTAGGGAAGCTATTCGTTGTAGAGAGGCTGGAGAGGCCAAGGTTATTCTGACAGCAATGTGTGGACATGGCCATTTTGATCTGCCAGCTTATGAAAAGTACTTGCAAGGTAACATGGTTGACCTCTCATTCTCAGAAGACAAGATGAAAGCTTCACTGGCCAATATTCCTCAAGTGATTACCTGA
>Glyma13g07130.1 sequence type=predicted peptide gene model=Glyma13g07130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMAHCVFPVNALPTPSPCFHSKVGKQWPQGFALSVRPTNPKRLSSACKVRATLGASDKSIGIPNQWYNVIADLPVKPPPPLHPKTYEPIKPDDLSPLFPDELIRQEIASDRFIDIPDEVLDVYKLWRPTPLIRAKRLEKLLDTPARIYYKYEGVSPAGSHKPNSAVPQAWYNLQAGVKNVVTETGAGQWGSALAFACSIFGLGCEVWQVRASYDSKPYRRLMMQTWGAKVHPSPSMITEAGRRMLQEDPSSPGSLGIAISEAVEVAAKNADTKYCLGSVLNHVLLHQSVIGEECIKQMEAIGETPDVIIGCTGGGSNFAGLSFPFLREKLNKKINPVIRAVEPAACPSLTKGVYTYDYGDTAGMTPLMKMHTLGHDFVPDPIHAGGLRYHGMAPLISHVYDLGLMEAIAIPQTECFQGAIQFARSEGLIPAPEPTHAIAATIREAIRCREAGEAKVILTAMCGHGHFDLPAYEKYLQGNMVDLSFSEDKMKASLANIPQVIT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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