Glyma13g06990 - SoyBase

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Report for Sequence Feature Glyma13g06990

Feature Type:	gene_model
Chromosome:	Gm13
Start:	7155168
stop:	7158415
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g06990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02350	AT	Annotation by Michelle Graham. TAIR10: galacturonosyltransferase 9 \| chr3:479248-481178 FORWARD LENGTH=561	SoyBase	E_val: 0	ISS
GO:0016051	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
GO:0047262	GO-mf	Annotation by Michelle Graham. GO Molecular Function: polygalacturonate 4-alpha-galacturonosyltransferase activity	SoyBase	N/A	ISS
PTHR13778	Panther	GLYCOSYL TRANSFERASE-RELATED	JGI		ISS
PTHR13778:SF3	Panther	GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 1	JGI		ISS
PF01501	PFAM	Glycosyl transferase family 8	JGI		ISS
UniRef100_G7ZV05	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycosyltransferase n=1 Tax=Medicago truncatula RepID=G7ZV05_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LWY0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWY0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g06990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g06990

Paralog	Evidence	Comments
Glyma19g05060	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g06990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g050600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g06990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g06990

Limit To All Plant Sequences

>Glyma13g06990.1   sequence type=CDS   gene model=Glyma13g06990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTTGCCACGAGAGGAGCCAGGGGTGGATCTAGTTTTCGTAGTTTGTTCTCGTTTCGGATCTTCATCTCTGCCATATTTTCTCTTCTCTTCGTTGCCACCCTTTCGGTCCTCTTCACCACCAACCCCTCCACATCGAACGATGACTCTGATCTTCCCACGACTGGTAATGCATACGTGCATAGAACCTTTTTGGCATTGAAATCTGACCCTCTTAGGACCCGAATGGATTTGATACACCAACAAGCTAAAGATCACATTGCACTAGTGAATGCCTATGGTGCTTATGCTAGGAAGCTCAAGCTTGACATTTCTAAGCAATTGAAGATGTTTGATGAGTTGGCACACAATTTTTCGGATATTGTGTTGAAACCAACCTATAAGGCATCACTGTTTGATTCCGATGGTCCAATTGATGAGGATGTGCTGAGGCAGTTTGAGAAGGAGGTTAAGGATAGAGTGAAGATTGCACGGATGATCATTGTTGAGGCCAAAGAGAATTATGATAATCAGTTGAAGATCCAGAAGTTGAAGGACACGATATTTGCTGTTCATGAGTCACTTGCAAAGGCAAAGAAGAATGGGGCGTTGGCAAGCTTGATTTCGGCCAGATCAATCCCCAAGAGCTTGCATTGTTTGGCAATGAGGCTGATGGGTGAGAAGATTTCAAATCCTGAGAAATATAGAGATGAGGAGCCCAAGCTGGAGTTTGAAGATCCCACTTTGTATCATTATGCTATATTCTCAGATAATGTCATAGCTGTGTCTGTGGTGGTGAGATCTCTGGTGAAGAATGCAGTGGAACCATGGAAGCATGTTTTCCATGTTGTTACAAACAGGATGAATGTTGGGGCAATGAAGGTTTGGTTTAAGATGAGGCCCATTGAAGGGGGTGCATTTTTAGAGGTGAAATCGGTGGAAGAATTCACATTCTTAAATTCATCATATGTCCCGATCTTGAGGCAACTTGAGTCAGCCAAAATGAAGCAGCGGTACTTGGAGAATCAAGCTGATAATGCCACAAATGATGCAAACATGAAAAATGCCAAGTCCCTGTCCATGTTGGATCACCTTCGATTTTATTTGCCAGAGATGTACCCTAAATTGTATAAGATCTTACTTTTGGATGATGATGTTGTGGTTCAAAAAGACTTGACAGGTTTGTGGAAAATTGATTTGGATGGGAAGGTGAATGGTGCTGTTGAGATCTGTTTTGGCTCTTTCCACCGATATGCCCAGTACTTGAATTTCTCTCATCCTTTAATCAAGGAGAGCTTCAATCCAAAAGCTTGTGCTTGGGCCTATGGCATGAATATATTTAATCTTGATGCTTGGAGGCATGAAAAGTGTACAGATAATTATCACTATTGGCAGAACTTGAATGAAGACCAAACTTTGTGGACAGCAGGGACCCTGTCACCTGGTTTGATCACCTTCTACTCCACAACCAAGACACTGGACAAATCCTGGCACGTGCTTGGGCTAGGATACAATCCAAGCATTAGCATGGATGAGATCAGCAATGCTGCAGTCATTCATTACAATGGAAACATGAAACCTTGGCTTGATATTGCTTTGAACCAATACAAAAATCTTTGGACCAAATACGTGGACAACAATATGGAGTTTGTGCAGATGTGCAATTTTGGCCTATAG

Predicted protein sequences of Glyma13g06990

Limit To All Plant Sequences

>Glyma13g06990.1   sequence type=predicted peptide   gene model=Glyma13g06990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVATRGARGGSSFRSLFSFRIFISAIFSLLFVATLSVLFTTNPSTSNDDSDLPTTGNAYVHRTFLALKSDPLRTRMDLIHQQAKDHIALVNAYGAYARKLKLDISKQLKMFDELAHNFSDIVLKPTYKASLFDSDGPIDEDVLRQFEKEVKDRVKIARMIIVEAKENYDNQLKIQKLKDTIFAVHESLAKAKKNGALASLISARSIPKSLHCLAMRLMGEKISNPEKYRDEEPKLEFEDPTLYHYAIFSDNVIAVSVVVRSLVKNAVEPWKHVFHVVTNRMNVGAMKVWFKMRPIEGGAFLEVKSVEEFTFLNSSYVPILRQLESAKMKQRYLENQADNATNDANMKNAKSLSMLDHLRFYLPEMYPKLYKILLLDDDVVVQKDLTGLWKIDLDGKVNGAVEICFGSFHRYAQYLNFSHPLIKESFNPKACAWAYGMNIFNLDAWRHEKCTDNYHYWQNLNEDQTLWTAGTLSPGLITFYSTTKTLDKSWHVLGLGYNPSISMDEISNAAVIHYNGNMKPWLDIALNQYKNLWTKYVDNNMEFVQMCNFGL*

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