Report for Sequence Feature Glyma13g06960
Feature Type: gene_model
Chromosome: Gm13
Start: 7130071
stop: 7133683
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g06960
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G02340 AT
Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr3:477032-478261 FORWARD LENGTH=409
SoyBase E_val: 1.00E-45 ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
PTHR22763 Panther
RING ZINC FINGER PROTEIN
JGI ISS
UniRef100_G7ZV10 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase RNF181 n=1 Tax=Medicago truncatula RepID=G7ZV10_MEDTR
SoyBase E_val: 4.00E-91 ISS
UniRef100_I1LWX8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LWX8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g06960
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma13g06960
Paralog Evidence Comments
Glyma19g05040 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g06960 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g050800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g06960
Coding sequences of Glyma13g06960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g06960.1 sequence type=CDS gene model=Glyma13g06960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCTAATCATCATCGTTCCTCCAATCCCTTCTCATCTACTCACTCTGATTCCGATTCCGACTCAGTGAGTTGCTTCGTCACCGATCTCTTCGAGACTCGCTCTCGCCTCTGCTCCTGCGACGACGACACTGACATAAACCCCTTCTCTGACGTCGTTTGCGACCTCCATCGCACGGAGCATATGTTAGGGTTAGGGTTAGGGTTTGGCGTTGAAATTGATCCCGAAAGCCAAACAAATGATCGTGATAATCATCGTGGTGATAGGGTTTTGGAAGCTGATAGAGTTTTCAATTTCACGGTGGGGGATGGTTCGGGTGGGCTTAGGGTTGTAGGGTTTGGCTCGGAATCCGAATCGAGTAGCGAGGAGGGTGGGATTCGTGATGGTGGCGGGTTTGATGATTTCGATGTTCGGTTGTGTTGGGATAGTCTCTGTTTGGAGGATCAGAGGACGCTGAACGAGGGGTTTGAGTGGGAGGAGGTGGAGGAGAGGGTGAATGAGAGAGAGGATTTGGGTTTGGTGGTTGATGAGGTTGAAATTGAAAGTGATGATGGTGATGGGAATTCGGTGGCGTCGGGTTTTACAAATGCCGTTGAGGAGGAGGATGCCGGGGAAGAGGCACTGAGGTACCTCGAATGGGAGATCCTCTTGGCGGTTAACAATTTGGAGAGGAATGTGAATGATGTGTTGGAGCACGAGGGCAATGCTGTTGGTGGTGCTGATTTGTTAACAATTCAGGATGGTTATGTGTACGCAGCCGAGTATGATGTTTTGTTCGGGCAGTTTCTTGAGAATGAGAGTGCCTTGAAGGGGAGCCCTCCGGCCTCGAAGAGTGTTGTGGAGAGTCTCCCGTTGGTGGAGTTGTCCAAGGAGGAGTTGTTGCAGGGGAAGAACGTGGCATGTGCCATTTGCAAGGATGAGGTTTTGTTGGAGGAGAAGGTGAGAAGGCTGCCTTGCTCCCATTGTTATCATGGGGACTGCATTTTGCCGTGGTTGGGCATTCGCAACACGTGCCCAGTTTGCCGGTTTGAGCTACCCACTGATGATCCGGACTATGAGCAGGGGAAGGTCCAGAGGGCAGCACATGGTCTGTTGGAGCTTGCGGCAGCACGGATGCAATTTTGA
Predicted protein sequences of Glyma13g06960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g06960.1 sequence type=predicted peptide gene model=Glyma13g06960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSNHHRSSNPFSSTHSDSDSDSVSCFVTDLFETRSRLCSCDDDTDINPFSDVVCDLHRTEHMLGLGLGFGVEIDPESQTNDRDNHRGDRVLEADRVFNFTVGDGSGGLRVVGFGSESESSSEEGGIRDGGGFDDFDVRLCWDSLCLEDQRTLNEGFEWEEVEERVNEREDLGLVVDEVEIESDDGDGNSVASGFTNAVEEEDAGEEALRYLEWEILLAVNNLERNVNDVLEHEGNAVGGADLLTIQDGYVYAAEYDVLFGQFLENESALKGSPPASKSVVESLPLVELSKEELLQGKNVACAICKDEVLLEEKVRRLPCSHCYHGDCILPWLGIRNTCPVCRFELPTDDPDYEQGKVQRAAHGLLELAAARMQF*