Glyma13g06940 - SoyBase

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Report for Sequence Feature Glyma13g06940

Feature Type:	gene_model
Chromosome:	Gm13
Start:	7103539
stop:	7108944
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g06940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G19920	AT	Annotation by Michelle Graham. TAIR10: Pseudouridine synthase/archaeosine transglycosylase-like family protein \| chr1:6914835-6916657 REVERSE LENGTH=476	SoyBase	E_val: 0	ISS
GO:0000103	GO-bp	Annotation by Michelle Graham. GO Biological Process: sulfate assimilation	SoyBase	N/A	ISS
GO:0009970	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to sulfate starvation	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0004781	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sulfate adenylyltransferase (ATP) activity	SoyBase	N/A	ISS
KOG0636	KOG	ATP sulfurylase (sulfate adenylyltransferase)	JGI		ISS
PTHR24799	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24799:SF2	Panther		JGI		ISS
PF01747	PFAM	ATP-sulfurylase	JGI		ISS
UniRef100_G7ZV13	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase n=1 Tax=Medicago truncatula RepID=G7ZV13_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LWX5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LWX5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g06940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g06940

Paralog	Evidence	Comments
Glyma19g05020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g06940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g051000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g06940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g06940

Limit To All Plant Sequences

>Glyma13g06940.1   sequence type=CDS   gene model=Glyma13g06940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTAAGTCTAGCCATCAAACTACACCTGGCTTCTTCTTCTCCTTCTTTTTCCCTCCTTACCCTCAACAACCACCAACATGCAAACAAGTTAACAACTTCCGAAACTTGTTCCAACACCAAGGTTCGTCCCAAACCCATTTATAGCACCAACCCTTTGATCATTCCCACGTGTAAAGTGAGGCCAAGAGTGCAATACTGTGGCACCATGATCAAGAGTTCTTTGATAGAGCCTGATGGGGGGGCATTGGTGGATCTTGTGGTGCCTGAGGGTGAGAGGGGTGCTAAGATCACCTTGGCTGAGTCACTGCCTAAGGTGCAGCTCACAAGGATTGATCTTGAGTGGGTGCATGTGGTGGGGGAAGGGTGGGCTAGTCCCTTGAAAGGGTTCATGAGGGAGGATGAGTATCTTCAGAGTTTGCATTTCAATTCCCTTAGGGTCAAGGATGGTTCTGTGGTGAACATGTCCCTTCCCATTGTTTTGGCCATTGATGATGAGACCAAAGAGAGAATTGGATCCTCTTCCCATGTGGGGTTGCTCGGGCCTGATGGAGATTGTGTTGCAATTCTTCGAAGTATTGAAATCTACAAGCATAACAAGGAAGAAAGAATAGCTAGAACTTGGGGAACAACTGCTCCTGGATTGCCATATGTTGAGGAGGTGATTACTCCGGCAGGAAATTGGCTTATTGGAGGAGATTTGGAAGTGCTAAAACCTATCAAATATAATGATGGCCTAGATAACTACAGGCTCTCTCCCAAACAACTCCGTGAAGAATTTGACAAGCGTCAAGCAGATGCAGTTTTTGCCTTTCAGTTAAGAAACCCTGTACACAATGGTCATGCCTTGTTAATGAATGATACTCGTAAGCGCCTATTGGAAATGGGCTACAAAAATCCCATTTTACTGCTTCATCCTCTTGGAGGTTTTGTAAAGGCTGATGACGTTCCCTTGGATGTCAGGATGGAGCAACATAGCAAGGTCCTAGAAGATGGAGTTCTTGATCCTGAGACTACCATAGTTGCCATATTTCCATCACCTATGCATTATGCTGGTCCAACTGAAGTACAGTGGCATGCAAAGGCACGGATAAATGCAGGTGCAAATTTCTATATTGTTGGTCGTGATCCGGCTGGTATGGGCCACCCAACTGAGAAAAGGGATTTGTATGACCCTGATCATGGAAAGAAGGTGCTTAGCATGGCTCCCGGTCTGGAGAAGCTTAACATTTTGCCATTCAGGGTGGCAGCTTATGACACTAAGGTAAACAAGATGGCATTTTTCGACCCAACCCGTGCTAAAGATTTCCTCTTTATATCTGGAACCAAGATGCGGGCTTTTGCAAAAAGTGGGGAGAATCCGCCAGAAGGTTTCATGTGCCCAAGTGGGTGGAAGGTTCTTGTCAAATATTATGAAAGTTTGCAGGCAGAAGAGCCATCACAACAGCCTGTGCTATCTACTTAG

Predicted protein sequences of Glyma13g06940

Limit To All Plant Sequences

>Glyma13g06940.1   sequence type=predicted peptide   gene model=Glyma13g06940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLSLAIKLHLASSSPSFSLLTLNNHQHANKLTTSETCSNTKVRPKPIYSTNPLIIPTCKVRPRVQYCGTMIKSSLIEPDGGALVDLVVPEGERGAKITLAESLPKVQLTRIDLEWVHVVGEGWASPLKGFMREDEYLQSLHFNSLRVKDGSVVNMSLPIVLAIDDETKERIGSSSHVGLLGPDGDCVAILRSIEIYKHNKEERIARTWGTTAPGLPYVEEVITPAGNWLIGGDLEVLKPIKYNDGLDNYRLSPKQLREEFDKRQADAVFAFQLRNPVHNGHALLMNDTRKRLLEMGYKNPILLLHPLGGFVKADDVPLDVRMEQHSKVLEDGVLDPETTIVAIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAPGLEKLNILPFRVAAYDTKVNKMAFFDPTRAKDFLFISGTKMRAFAKSGENPPEGFMCPSGWKVLVKYYESLQAEEPSQQPVLST*

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