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Report for Sequence Feature Glyma13g06715

Feature Type:gene_model
Chromosome:Gm13
Start:6877893
stop:6882421
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g06715
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G24530AT Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:8378964-8383154 FORWARD LENGTH=341 SoyBaseE_val: 2.00E-80ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0001666GO-bp Annotation by Michelle Graham. GO Biological Process: response to hypoxia SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0009595GO-bp Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus SoyBaseN/AISS
GO:0009617GO-bp Annotation by Michelle Graham. GO Biological Process: response to bacterium SoyBaseN/AISS
GO:0009620GO-bp Annotation by Michelle Graham. GO Biological Process: response to fungus SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0009813GO-bp Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010310GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0031347GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of defense response SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0043900GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process SoyBaseN/AISS
GO:0045087GO-bp Annotation by Michelle Graham. GO Biological Process: innate immune response SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016706GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors SoyBaseN/AISS
KOG0143 KOG Iron/ascorbate family oxidoreductases JGI ISS
PTHR10209Panther FE(II)/ ASCORBATE OXIDASE SUPERFAMILY JGI ISS
PTHR10209:SF55Panther OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI JGI ISS
PF03171PFAM 2OG-Fe(II) oxygenase superfamily JGI ISS
UniRef100_B9T297UniRef Annotation by Michelle Graham. Most informative UniRef hit: 1-aminocyclopropane-1-carboxylate oxidase, putative n=1 Tax=Ricinus communis RepID=B9T297_RICCO SoyBaseE_val: 3.00E-110ISS
UniRef100_I1LWV9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWV9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g06715
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g06715 not represented in the dataset
Glyma13g06715 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g06715
ParalogEvidenceComments
Glyma19g04280 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g06715 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g052800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g06715
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g06715
>Glyma13g06715.1   sequence type=CDS   gene model=Glyma13g06715   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGACCTTGGATCAGATGCTTGTGTCAAGCTGGTACAATGTTCATTCCTTGGTGCCCCCATCCTATGTACAATTACCGGAAAACAGGCCTAGCAAGGTGGTTAGTTCTTTGCATAAGGCAATACCCGTGATTGATTTTGGAGGACATGATCGTGTTGATACCACAAAACAGATTTTGGAAGCCTCCGAGGAATATGGCTTTTTCCAGGTGATCAACCATGGAGTTTCCAAGGATTTAATGGACGAAACACTGAACATTTTTAAAGAATTCCATGCCATGGCTCCCAAAGAGAAAGTCAATGAATGCTCTAAGGACCCAAATGGAAGCTGCAAGCTTTATACAAGTAGTGAGAATTACAAGAAAGATGCGATTCATTATTGGAAGGACTCACTAACACATCCTTGTCCTCCTTCTGGGGAATACATGGAGTATTGGCCTCAAAAACCATCCAAATACCGGGAGATTGTTGGAAAATACACAAGAGAATTGAAGAAACTAGCGCTTAAAATTTTGGAGCTGCTTTGTGAAGGATTAGGGCTTAACCTAGGGTATTTCTGTGGTGGACTAAGTGAAAATCCATCAGTGTTGGTTCATCACTACCCTCCTTGCCCTGACCCAAGTTTAACATTGGGCTTAGCTAAGCACAGGGACCCTACTATTATCACCATTTTGCTTCAAGATAAGGAGGTGCAGGGACTTCAAGTCCTCAAGGATGGAGAATGGATTGGAGTTGAGCCCATTCCCAACGCTTTTGTGGTTAACATCGGTCTACTCTTGCAGATCATAACTAATGGAAGGCTTGTTGGCGCTGAGCACCGAGCTGTGACGAATTCGAGCAGTGCACGCACAAGTGTTGCCTATTTCGTCTATCCATCATTTGGAAGCATCATAGAACCCGCACAAGCTTTGATCAATGGAAGCACTCCAGCAATATACAAATCCATGAGATTTGGAGAGTTTCGTAGAAATTTCTTTCACAAAGGTCCCAAGATTGAAGAAGAATTGCAGTAA
Predicted protein sequences of Glyma13g06715
>Glyma13g06715.1   sequence type=predicted peptide   gene model=Glyma13g06715   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METLDQMLVSSWYNVHSLVPPSYVQLPENRPSKVVSSLHKAIPVIDFGGHDRVDTTKQILEASEEYGFFQVINHGVSKDLMDETLNIFKEFHAMAPKEKVNECSKDPNGSCKLYTSSENYKKDAIHYWKDSLTHPCPPSGEYMEYWPQKPSKYREIVGKYTRELKKLALKILELLCEGLGLNLGYFCGGLSENPSVLVHHYPPCPDPSLTLGLAKHRDPTIITILLQDKEVQGLQVLKDGEWIGVEPIPNAFVVNIGLLLQIITNGRLVGAEHRAVTNSSSARTSVAYFVYPSFGSIIEPAQALINGSTPAIYKSMRFGEFRRNFFHKGPKIEEELQ*






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