Glyma13g06550 - SoyBase

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Report for Sequence Feature Glyma13g06550

Feature Type:	gene_model
Chromosome:	Gm13
Start:	6761688
stop:	6763748
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g06550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G29635	AT	Annotation by Michelle Graham. TAIR10: HXXXD-type acyl-transferase family protein \| chr3:11465851-11467227 REVERSE LENGTH=458	SoyBase	E_val: 3.00E-104	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0016747	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups	SoyBase	N/A	ISS
PF02458	PFAM	Transferase family	JGI		ISS
UniRef100_A7BID0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Malonyl-CoA:isoflavone 7-O-glucoside-6''-O-malonyltransferase n=2 Tax=Glycine max RepID=A7BID0_SOYBN	SoyBase	E_val: 7.00E-180	ISS
UniRef100_I1LWU6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1LWU6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g06550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g06550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g054000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g06550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g06550

Limit To All Plant Sequences

>Glyma13g06550.1   sequence type=CDS   gene model=Glyma13g06550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGACGCAACCAGCAGCAGCAGCAACAGCTTTGAAAGTAATTCAAGTTTGTTCAGTGGCACCGCTTCAAGAACCATCCCTTTCCACCGTCGTTGTTCCAAACTCTCTCACACTAACCTTCTTCGACCTCTTGTGGCTACGCTTCCCACCTGTTGAGCGTCTCTTCTTCTACTCCTTCCCACACCCCACCTCTTCATTTCTTCACTCCCTTCTCCCCACTCTCCAACACTCTCTCTCCCTCACTCTCCATCACTTCCTCCCTTTCGCTGGCACCCTCACATGGCCCTCTCACTCTCCCAAACCCATCATCAACTACACCCCTGGCGACGCCGTTTCATTCACTGTCGCCGAATCCAACCAAAACTTCAACAACCTCACTTCTCGTCTGTGTGAAGCATCGCAACGACACCGTTTGATACCCCACTTGACCGCTTCCCATGACAAAGCGTCTGTGTTGGCACTTCAAGTAACAGTGTTCCCAAACGCTGGTTTTTGCATTGGAATAACCACACACCATGCAGCTTTCGACGGAAAATCTTCAACCATGTTCATCAAATCATGGGCTTATACATGCTCCAACCTAATTCAAAACAACAACACACCGTTATTTTTATTACCTCAGCATCTCACACCGTTCTTTGACAGATCAGTGATAAGAGACCCTTCTGGAATTGCTGAAGCCTACGTGGACGCGTGGCAGGAGAGTAGCGGACCAAACAATCGAAGCCTCAAGGTGTGGGAATCCTTCACCGAAATACCGAGTGATGGATGCAAAGGTGTATTTGAGTTAACACCTTCACAAATTCAGAAGCTAAAGCAACATGCAAAGTCTAAGCTTATGAAAACGAAGGACTTTTCGTTTTCGACGTTTGCTGTTACGTGTGCTTATGTGTTGACTTGCTTGGTCAAAGCAAAACAACCAGAGGAAGATGATGTGGGTTTCGTATTTTCTGTGGACTGTAGATCCCGCTTGAATCCTCCGATTCCTGCAACGTATTTTGGGAACTGCGTCGCGGGGCAAAAGGTTGTGGCTGTGACAAAGAACTTGGTTGGAATAAGCGATGGTTTTATCAGTGCTTTGGAAGGGATAAGTGAGGCTTTGAATATAGTGAAGGGTGAGGGAGTGCTGAGTGGAGCAGAAACTTGGGTTTCGTTAATGCTTGAAAGAGGGGAGAGTGTGCCTCGATTATTCAGTATTGCTGGATCGCCATTGTTTGAGGTTTATGGCACTGATTTTGGTTGGGGAAGGCCAAAGAAAGTGGACATGACTTCCATAGATGGAACGGGAGCGTTTTCTCTTAGTGAAAGTAGGGATAACAGTGGAGGAATTGAGATTGGTTTGATGTTATGTCAACGTGAGATGGAAGCTTTTAGTACCCTTTTTGTTGGAGGACATGAATCCTTTTAA

Predicted protein sequences of Glyma13g06550

Limit To All Plant Sequences

>Glyma13g06550.1   sequence type=predicted peptide   gene model=Glyma13g06550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTQPAAAATALKVIQVCSVAPLQEPSLSTVVVPNSLTLTFFDLLWLRFPPVERLFFYSFPHPTSSFLHSLLPTLQHSLSLTLHHFLPFAGTLTWPSHSPKPIINYTPGDAVSFTVAESNQNFNNLTSRLCEASQRHRLIPHLTASHDKASVLALQVTVFPNAGFCIGITTHHAAFDGKSSTMFIKSWAYTCSNLIQNNNTPLFLLPQHLTPFFDRSVIRDPSGIAEAYVDAWQESSGPNNRSLKVWESFTEIPSDGCKGVFELTPSQIQKLKQHAKSKLMKTKDFSFSTFAVTCAYVLTCLVKAKQPEEDDVGFVFSVDCRSRLNPPIPATYFGNCVAGQKVVAVTKNLVGISDGFISALEGISEALNIVKGEGVLSGAETWVSLMLERGESVPRLFSIAGSPLFEVYGTDFGWGRPKKVDMTSIDGTGAFSLSESRDNSGGIEIGLMLCQREMEAFSTLFVGGHESF*

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