SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G15610 | AT | Annotation by Michelle Graham. TAIR10: Proteasome component (PCI) domain protein | chr5:5079579-5081929 FORWARD LENGTH=413 | SoyBase | E_val: 0 | ISS |
| GO:0006302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair | SoyBase | N/A | ISS |
| GO:0006312 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitotic recombination | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0007129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: synapsis | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0034968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone lysine methylation | SoyBase | N/A | ISS |
| GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2753 | KOG | Uncharacterized conserved protein, contains PCI domain | JGI | ISS | |
| PTHR15350 | Panther | COP9 COMPLEX SUBUNIT 7A | JGI | ISS | |
| PTHR15350:SF2 | Panther | gb def: k08f11.3.p [caenorhabditis elegans] | JGI | ISS | |
| PF01399 | PFAM | PCI domain | JGI | ISS | |
| UniRef100_B9T5M0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cop9 complex subunit 7a, putative n=1 Tax=Ricinus communis RepID=B9T5M0_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LWT5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWT5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g06410 not represented in the dataset |
Glyma13g06410 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g055200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g06410.1 sequence type=CDS gene model=Glyma13g06410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACGACGGTGGTGCCCACCTCCGAAGAAGACGCTGCTCTCTCTGTTGTCCGATTCGCCTCTGAACTCGCCTGGGCCGATGCCGGTCCCGAGGTTGCTGAGCCTCAAGTTAGTAGACTCTGCATGGAGGCTGAAGAGTTTATCGTTATGGGAAAATGGTTGGAACTAGCATCATTGATGATTACCTCTGCTGAATTGGTTTTCTCAAAGGTTTCTGAAACAGATATAGAGTCCATCTTCACTATCATCTGCAATCTTGTGACAAAGACTGAGAATCCAGATGAAGTGATGGAGATTGTAAAAGTTATAACTGCAAAAATAATTCAGCAGCCAAACGAAAAGCCTGCTGTGCGATTGAAGACTTTGATCAATCTGTACAATCTTTTGGAGACTCCATACTGCCAGTTTTATGTCTACATGAAGGCATTGAATTTAGCTGTTAATGGGAAAGTCACAGAATACATTATACCTTCATTCAAAAAGATAGATAGCTTCTTGAAAGAGTGGAAAATTGGGATACCTGAACAGAGAGAGCTCTTTCTCACTATCTCTAATATTTTGAAGGAAAATAAAAGCATGTCAAAGGATGCTTTTAAGTTCCTGAGCAATTATCTGTCGACCTTTTCGGGAGAAGATGCACATGTTTTGAGTGAAGCCAAGGAGGAGGCCGCACGTGCAATTGTGGAATTTGTCAGAGCTCCTGACATATATCAGTGTGATTTGCTTGACTTGCCTGCTGTTGGGCAACTGGAGAAGGATGCCAAATATGCTCTGTTATATCAGCTTCTTAAGATTTTTCTTACCCAGAGGCTAGATGCATACTTAGAATATCAAGCTGCAAATTCCACCTTGTTGAAAAACTATGGCCTTGTGCCTGAAGAATGCATTTCCAAAATGAGGCTGATGTCATTGATGGATCTTACCTCTGATGGTTCTGGCCAAATTCCATATGAACTTATTAGGGACACACTTCAGATCAATGATGATGAAGTGGAACTATGGGTGGTTAGAGCAATAACTGCCAAGTTAATTGACTGTAAGATGGACCAAATGCATCAATCAGTAGTTGTTAGTCATCCTACTGATCGTGTGTTTGGTCAGCACCAATGGCAAGCACTGAGAACAAAGCTAGCGACATGGAGAGGAAACATTGCAAATGTTATCAGTACCATTCAGGCCAACAAAATAACGGAGGATGGGTCTCAGGCAGCCCAAGGTTTGGTAGTTAGGTGA
>Glyma13g06410.1 sequence type=predicted peptide gene model=Glyma13g06410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTTVVPTSEEDAALSVVRFASELAWADAGPEVAEPQVSRLCMEAEEFIVMGKWLELASLMITSAELVFSKVSETDIESIFTIICNLVTKTENPDEVMEIVKVITAKIIQQPNEKPAVRLKTLINLYNLLETPYCQFYVYMKALNLAVNGKVTEYIIPSFKKIDSFLKEWKIGIPEQRELFLTISNILKENKSMSKDAFKFLSNYLSTFSGEDAHVLSEAKEEAARAIVEFVRAPDIYQCDLLDLPAVGQLEKDAKYALLYQLLKIFLTQRLDAYLEYQAANSTLLKNYGLVPEECISKMRLMSLMDLTSDGSGQIPYELIRDTLQINDDEVELWVVRAITAKLIDCKMDQMHQSVVVSHPTDRVFGQHQWQALRTKLATWRGNIANVISTIQANKITEDGSQAAQGLVVR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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