Report for Sequence Feature Glyma13g06400
Feature Type: gene_model
Chromosome: Gm13
Start: 6646239
stop: 6649541
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g06400
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G17430 AT
Annotation by Michelle Graham. TAIR10: O-fucosyltransferase family protein | chr4:9725201-9726801 REVERSE LENGTH=507
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005768 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endosome
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005802 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network
SoyBase N/A ISS
GO:0016757 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups
SoyBase N/A ISS
PF10250 PFAM
GDP-fucose protein O-fucosyltransferase
JGI ISS
UniRef100_G7LAH6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: CigA protein n=1 Tax=Medicago truncatula RepID=G7LAH6_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1LWT4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWT4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g06400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma13g06400
Paralog Evidence Comments
Glyma19g03987 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g06400 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g055300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g06400
Coding sequences of Glyma13g06400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g06400.1 sequence type=CDS gene model=Glyma13g06400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACACTTTGAATCCCAACCCACCAACCAGAATGTTGTCTAAAAGAAAACCCCTTTACAGATTTCCACTCATTCCTGTTTTTGCCCTTGTCATATGCCTCTCCTTCTTGGTTTTGTATCGCTACTATGCAAAACCTGATTCCCAGTTCAATGGATTGTCCAAAACTTCAACAATGTCACATGCCCCTCAATGCTCCGGGCAAGCCCTCGCCTTAGGGGAGAAATTCGTGTGGTATGCGCCTCACAGCGGGTTCAGCAACCAGCTTTCGGAGTTCAAGAATGCTGTTCTGATGGCGGGGATACTGAATCGGACTTTGGTGGTTCCTCCCATTCTGGATCACCATGCTGTTGCCCTAGGTAGCTGTCCGAAGTTTCGCGTAGTGGATCCCAAGGATGTTCGAATTTCTGTTTGGGATCATGTGATTGAGCTTGTCCAGAGTCGAAGGTATATCTCCATTGCTGAAATTATAGATGTCTCATCATTAGTTTCTCCCTCTCTTGTTCGAGTGATTGATCTTAGGGATTTTGTGTCAATATGGTGTGGCATCAGCTTAGATTTGGCTTGCGTAAAAGATACAAAGTTGCAGTCCTCTGTTTCTGAAAGCCTAAAACAATGTGGATCTCTGCTAGCTGGGCTCCATGGTAGTATTGAAAAGTGTATATATGCCGTCAATGAAGATTGCAGAACTACAATATGGACTTTCCATACAGATGGCCATGAAGACGGAAAGTTAGATTCATTCCAAGCGGATGAACAACTGAAGCAAAAAAAGAAAATATCATATGTTCGGAGACGGAAAGATGTATTTAAGACTCTTGGACCTGGTTCTGAAGTTGAATCAGCCTCACTGCTAGCATTTGGAAGCCTGTTCTCTGCCGCATACAAAGGTTCTGAACTATATGTTGATATTCATGAATCTCATCAGGATCAGAGGTTTCGATCATTGATGGACAAGATTAAACATCTTCCATTTGTCCCAGAAATTATGATTGCTGGAAAGCAGTTCGTTAAAGAAACCATAAAGGCTCCATTTCTTTGTGCACAACTTAGACTGTTGGACGGGCAGTTTAAGAATCATCAAAAGGCTACCTTTCACGGATTAAGGCAAAAAATCGAATCTTTGAGGAAGGAAGGCCCTCTACCCGTTCATATTTTTATAATGACTGATCTTCCTGGAGATAATTGGACTGGTACTTATTTAAGTGATTTAATTAGTGACAAACATAACTATAAGGTACATTTCTTGAAAGAGAATGATAAGTTGGTTAGGCGAGCAGCCATAAAACTCATGGCAGCGGGTCATGGACAGAGGTTCATTTCAAATTCAGATAGTACAATTAGTAAAAGGTATTGTTCCAGTCAGAGACTACCAGATCTACTTCTTTATGTTGAGCAGACTGTATGTAGCTGTGCATCTCTTGGTTTTATTGGAACTCCTGGATCAACAATTGCTGAAAATATAGAACTAATGAGAAAATTTGGCTCAAGCTCCCAGCAATGTTGA
Predicted protein sequences of Glyma13g06400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g06400.1 sequence type=predicted peptide gene model=Glyma13g06400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNTLNPNPPTRMLSKRKPLYRFPLIPVFALVICLSFLVLYRYYAKPDSQFNGLSKTSTMSHAPQCSGQALALGEKFVWYAPHSGFSNQLSEFKNAVLMAGILNRTLVVPPILDHHAVALGSCPKFRVVDPKDVRISVWDHVIELVQSRRYISIAEIIDVSSLVSPSLVRVIDLRDFVSIWCGISLDLACVKDTKLQSSVSESLKQCGSLLAGLHGSIEKCIYAVNEDCRTTIWTFHTDGHEDGKLDSFQADEQLKQKKKISYVRRRKDVFKTLGPGSEVESASLLAFGSLFSAAYKGSELYVDIHESHQDQRFRSLMDKIKHLPFVPEIMIAGKQFVKETIKAPFLCAQLRLLDGQFKNHQKATFHGLRQKIESLRKEGPLPVHIFIMTDLPGDNWTGTYLSDLISDKHNYKVHFLKENDKLVRRAAIKLMAAGHGQRFISNSDSTISKRYCSSQRLPDLLLYVEQTVCSCASLGFIGTPGSTIAENIELMRKFGSSSQQC*