Glyma13g06340 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g06340

Feature Type:	gene_model
Chromosome:	Gm13
Start:	6595718
stop:	6597956
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g06340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G34930	AT	Annotation by Michelle Graham. TAIR10: arogenate dehydrogenase \| chr5:13233391-13235522 FORWARD LENGTH=640	SoyBase	E_val: 0	ISS
GO:0006567	GO-bp	Annotation by Michelle Graham. GO Biological Process: threonine catabolic process	SoyBase	N/A	ISS
GO:0006571	GO-bp	Annotation by Michelle Graham. GO Biological Process: tyrosine biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0004665	GO-mf	Annotation by Michelle Graham. GO Molecular Function: prephenate dehydrogenase (NADP+) activity	SoyBase	N/A	ISS
GO:0008977	GO-mf	Annotation by Michelle Graham. GO Molecular Function: prephenate dehydrogenase activity	SoyBase	N/A	ISS
KOG2380	KOG	Prephenate dehydrogenase (NADP+)	JGI		ISS
PTHR11811	Panther	6-PHOSPHOGLUCONATE DEHYDROGENASE	JGI		ISS
PF02153	PFAM	Prephenate dehydrogenase	JGI		ISS
UniRef100_G7JGK2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Arogenate dehydrogenase n=1 Tax=Medicago truncatula RepID=G7JGK2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233AB13	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233AB13 related cluster n=1 Tax=unknown RepID=UPI000233AB13	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g06340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g06340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g055500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g06340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g06340

Limit To All Plant Sequences

>Glyma13g06340.2   sequence type=CDS   gene model=Glyma13g06340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGAGTGTTTCAAGTTTTCGGCCGCCGGCTGTGTATCCTACGTTGTTGCATTGTCCGAGACTCCACCATGTTAATGTTTCCTTATTCTGCTCCCTTTCAAATGGTGCCTCTTCTTCATGTAGATCCCTCGGTATACTACGTGCCATCTACCGTGAATCCGAAGTGCCGGCTCAACAGTTGCACCACGTCCAGAACCAGAAGCTAAAGATTGGCATCATAGGCTTCGGCAAATTTGGGCAGTTCCTGGCCCGAACCTTGGTTCGACAGGGCCACACCGTCTTGGCCCATTCCCGCTCCGACTACACTCACGTCGCACTCGAACTCGGCGTAACATTCTTCGAAAACCCCCACGACCTCTGCGACGAACGCCCCGAAGTCATTTTGCTCTGTTGCTCCATCCTTTCCGCCAGGCACGTGCTCCTCACTCTTCCTCTGCAGCGTTTGGAGCCTGGCACATTGTTCGTCGACGTCCTTTCTGTCAAGGAGTTTCCCAAAAAGCTCTTGCTCGACGTGCTTCCCTCCAATCTCGACATTCTCTGTTCGCACCCCATGTTCGGCCCCGATAGCGCCAGCTGCGGCTGGAGTGGCCGTCGCTTTATGTTCGACAAGGTTCGAATTCGGAACGAGGAGCGGTGCAACAAGTTCCTGGACGTGTTCAAGAGAGAAAGATGCGAAATGGTGGAGATGAGTTGTGAAGATCATGATAAGCTTTCGGCAAAGACGCAGTTCATAACACACACTATCGGTAGGGTTTTGGGGATGTTGGACTTGGAGAAGACTCGTATTTATACTAAGGGGTATGAGTCTCTGTTGAATTTAAAGGAAAACACTGCTAAGGACAGTTTTGATCTCTATTATGGTTTGTTTATTCTTAATAAGAATTCCCCGGACATGTTGGGAAGGTTGTGTTTTGCTTTCCAGGAGTTGAGGAAACAACTCTTGAAAGGTGTGCATGTTGTTGTCAGAGAACACTTGTTTGAGAATCCCGTAACCGCAAAGGTGCAAAATTTACAAGATACTGCATCATTTCATAGTGATGTCAGCGAATACAAGTCGAGCCTTTCAAGTGATTATTCTTATAACAACTTGAAGTTGAAGATTGCAATAGTTGGTTTCGGCAACTTTGGTCAGTTTCTCGCAAAAACTATTGTGCGTCAAGGTCATCAAGTGTTGGCATACTCTAGGTCAGACTACTCTACTGTAGCTAAGGAATTGGGTGTTACTTATTTTCGTAATGCTGATGATCTATGTGCACAACATCCCGAAGTAATTTTACTTTGCACATCAATCCTTTCCACAGAGGGTGTTCTTAAATCATTCCCTTGGCAGAAATTGGAGAGAAGTACCTTGTTTGTTGATGTACTTTCTGTCAAGGAATTTCATAGAAACTTGTTTCTTCAACATTTGCCACTTGATTTTGATGTGCTCTGTACTCATCCCATGTTTGGGCCACAAAGTGCAAAAGATGGATGGAGTGGTTTTCTTTTTGTTTTTGATAAGGTTAGAATAGGAACAGATGAAGCAAGAACATCACGATGTGATCTGTTTCTCAACATTTTTTCTAGTGAAGGGTGTCAACTTGTTGAAATGTCATGTGCTGAACATGATCGGCAAGCAGTTGGATCGCAATTTATCACTCACACTGTAGGAAGAATGTTAGAAAAGCTAGATTTTTTGGAGCCAACGAAAATTGACACAATAGGCTTTGAGTCTTTGTTGAATTTGATGGATAATACTGTTAGAGACAGTTTTGATCTCTACAATGGTTTGTTCTTGTTTAATGAAAACTCCAGGCAACAACTAGAAGAATTTCATCTAGCTTTTGAGTCATTGCAGAATCAACTTTTGGATCATGCGCTTGATAACTTAAAGCAAGTATTAATACTTGAAGAAGAATCCCATGATTAG

Predicted protein sequences of Glyma13g06340

Limit To All Plant Sequences

>Glyma13g06340.2   sequence type=predicted peptide   gene model=Glyma13g06340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSVSSFRPPAVYPTLLHCPRLHHVNVSLFCSLSNGASSSCRSLGILRAIYRESEVPAQQLHHVQNQKLKIGIIGFGKFGQFLARTLVRQGHTVLAHSRSDYTHVALELGVTFFENPHDLCDERPEVILLCCSILSARHVLLTLPLQRLEPGTLFVDVLSVKEFPKKLLLDVLPSNLDILCSHPMFGPDSASCGWSGRRFMFDKVRIRNEERCNKFLDVFKRERCEMVEMSCEDHDKLSAKTQFITHTIGRVLGMLDLEKTRIYTKGYESLLNLKENTAKDSFDLYYGLFILNKNSPDMLGRLCFAFQELRKQLLKGVHVVVREHLFENPVTAKVQNLQDTASFHSDVSEYKSSLSSDYSYNNLKLKIAIVGFGNFGQFLAKTIVRQGHQVLAYSRSDYSTVAKELGVTYFRNADDLCAQHPEVILLCTSILSTEGVLKSFPWQKLERSTLFVDVLSVKEFHRNLFLQHLPLDFDVLCTHPMFGPQSAKDGWSGFLFVFDKVRIGTDEARTSRCDLFLNIFSSEGCQLVEMSCAEHDRQAVGSQFITHTVGRMLEKLDFLEPTKIDTIGFESLLNLMDNTVRDSFDLYNGLFLFNENSRQQLEEFHLAFESLQNQLLDHALDNLKQVLILEEESHD*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain