Glyma13g06290 - SoyBase

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Report for Sequence Feature Glyma13g06290

Feature Type:	gene_model
Chromosome:	Gm13
Start:	6549484
stop:	6557793
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g06290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G74160	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits to 2217 proteins in 314 species: Archae - 0; Bacteria - 264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses - 34; Other Eukaryotes - 1149 (source: NCBI BLink). \| chr1:27887164-27891151 FORWARD LENGTH=1025	SoyBase	E_val: 3.00E-98	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1LWS9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWS9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LF24	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein longifolia1 n=2 Tax=Arabidopsis thaliana RepID=Q9LF24_ARATH	SoyBase	E_val: 2.00E-79	ISS

Expression Patterns of Glyma13g06290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g06290

Paralog	Evidence	Comments
Glyma19g03820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g06290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g055700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g06290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g06290

Limit To All Plant Sequences

>Glyma13g06290.2   sequence type=CDS   gene model=Glyma13g06290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTAAAAAGGTTTTGACATCAATGAAGGATGAAAATCCAGATTTGCAGAAGCAAATTGGGTGCATCAGTGGGTTTCTTCAGCTGTTTGACCGCCACAGTTTCCTCACAGGTCAAAGCAATAGCAGCCACAATCAGAACATACCAAATAATAAAGGTGGAATCAGCAACCATATCAAAGAGGTGAATAATACAACTCAAAAGGCAACGGCAAATAATGTGAAGGTTGCAAGAGAGAATCAACAATTCTCCACTGAATCATCAGGAACTTCAATGACTTCATCGTCTCGCTCATCTAGCATGTCGTCCCTCGAGTTTAATAGAACAATTCAGATAGAGCCACCACCAATCAATCAAATGAAAATTCCAGAAAACTCTAACTCAGGAGCAGCAATGAAGCAAGGCAGCCAAGGCCATCAACCTCTTGATTTCTATGATATTGTCAAAGAGTCAATGCATAGAGATGTTCATGGATTGTCAGTAAAAACTGTAGCTAAAGAGGAAAAGAAGGGTCGTATCTTGAAATACATTGACTCTCCTAGGCCTTTGGAGCCCTCCAAATTTGTCAATACAGGAGTTATGGTTGCTTGGGATTCACCAAGACTCTCTTATGATGGGAGGGACACACAAGATACATTCAAATCCGCTACAAAGCCAAAGGAACTCCCAAGGCTTTCCTTGGACAGCAGACAAGGATCTATCAAAAGTTTCAATGAAGGAACAAAATCTCGTAGCCTTTTGAAGGGTCCCCAGAAAGGGTATGGTAGCTCCAGTACAATGCAGCTGCAGGAACCAGAAACTTCTAGAAGACCATCCAGTGTTGTAGCAAAGTTAATGGGACTTGAAGCCTTCCCAGACTGCACAGAAACTTGTGATACTCCGCCGCGAATCTCTAGCTGCGCCACCAACAAAAATGAGACAACCGCAGGACCTAGCACAAATGATGAGTACAAGCAACACCAAAGTGCAGCATCATCCCAGAGAACAATCAAGGGGTCTACCTTGCTTCAGTTTAGGAGGGATGCTTCAATCATGAACATGACGCCATATTCACGGTTTTCCCTTGAACCAATTCCGTGGAGGCAACCTGAAGCAAGCCAAGGTTCTCAATTACAGAATTCTAAGAGAAGCGAATCTTCAGCAAAAGCATCAAAACTGTCCCTCTCTGTATATGGGGAAATTGAAAAGAGGATAGCAGATCTAGAGTTCAAAAATTCTGGAAAAGATCTCAGGGCCCTTAAACAGATTCTTGATGCAATGCAGAGATATAAAGAATCATTGGATATTCCAAGAGATCAGGTGTCTAATTCTCTATCTGACAATAGAAGTAATAGCAGTCTCAGTGAAAGCTCAATAGTAAAAAGCCCAAGACTACGGCAGAAGGACCCAACATCCACCACTGTTGAGATGTCAAATTCAACCCAGGGTAGTAAGTCGCCGATTTTCATCATGAAACCAGCAAAAGCTGCAAGAAAAACCAATAGTCCAGCTTCCACAGAAATGTCATTTCAGGGTAAATCAGGCCCCAGCAAGTTTAGCCCTGCTAACCGCACAAATGGAATAATGGGTGACAAGCTTGACAGGCAAACAGCAAAGGGTATTGGTCCAGCAATCACACATGCCACAGATCCCATCAGCCAACCCTTTCACTCAGTGAATAAGAGTAATAAGAAGAGAACTTCAAAATTGATGCAATCCTCAAAAGTTCGTCAAGTAATCAATGGAGAAAATGCCACCAACTCCAGCAATACAGCAGAAGCCAAGAGCCCAAGACTACAAAAGAAGTTTGGTTTGGAGAGGCGTTCTCCGCCAACTAGCCCATCATCAGATTTGAGCAGTAACAGAAGACAACAGAATAGGCAATCGGTGGAATTGTCTTCCCCAAGTACAACACCCAGACAAAAATTCAGTGAGATTAGCAATCAAAGGAGGGATTTTAAGCATGAAGTTGACCTAGAAGTCATTCACATTGATCATTCTGATAGGATCAATGGCAACACCATCCAGCTAAAGGGCATTAACCAAAATAATGCTGCAGAAGAGTTGAGCAAGGAAAGCTTTATGGCTGAGAAAACAATTACAGCAGAACAGCCAAGCCCTGTGTCTGTTCTAGATGCTTCTTTCTACAGAGAAGAACCACCTTCTCCAGTTAAAAAGAAATCAGACATCTCAAAAGATTTAGATGATGCTCTGAACACTTATGATAGTAGTGAGGAGAACTCAGAAGATCTTCCACTTTCATCCAACACTACAAAAGCCAACTTCAGCAGTGATACTGACTTGAGAACTCAAAATTTGGTCGAAATTCTCCAACAAATTGACAACAGTGATGAGAGATTCACCAATTTCAGAGACAATAAAGATCCTGATCATAGATATATATCAGAAATACTGTTAGCATCGGGGCTGCTCAGCAGTCCAAGCTCTAGCCAGGTTTTTCATTCATCAAGTTACCCAATAAACCCAAAGTTGTTCCTTGCACTGGAGCAAATCAAGACAAACAAGATGTGCTTCAACATTGAACATAATGCCAAGAATATTACTGGGCTGAATAGTCCTGAGCAAATGCAAAGAAAGCTAATATTTGATGTTGTTAATGACATTCTAGCTCAGAAAATAATATTGGAAAGTTCTACTCTGTGGCGCCAACCAAATCAGCAAGCAGGTAGAAAACTAAGTGGACAGCTGCTTTTGGATGAGCTTTGCACAGAAATTGATAAGTTGCAACATAAAAATACAAATGTCAACCTGGCTGATGAGAATGAGAATTTGACAAGTCTCCTGTGGGAAGAGTTGATGCACTGTCCCACAATTTACACAAACAGTTACAGTGAAATACCAAATGTCGTGTTGGATATTGAACGGTTAATCTTCAAAGATTTGATAACTGAAGTTGTGAGAAGTGAACTAGCTAACCATTCTGGTAAGCATTGCAGACAACTGCTGCTTTCCAAGTAG

Predicted protein sequences of Glyma13g06290

Limit To All Plant Sequences

>Glyma13g06290.2   sequence type=predicted peptide   gene model=Glyma13g06290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKKVLTSMKDENPDLQKQIGCISGFLQLFDRHSFLTGQSNSSHNQNIPNNKGGISNHIKEVNNTTQKATANNVKVARENQQFSTESSGTSMTSSSRSSSMSSLEFNRTIQIEPPPINQMKIPENSNSGAAMKQGSQGHQPLDFYDIVKESMHRDVHGLSVKTVAKEEKKGRILKYIDSPRPLEPSKFVNTGVMVAWDSPRLSYDGRDTQDTFKSATKPKELPRLSLDSRQGSIKSFNEGTKSRSLLKGPQKGYGSSSTMQLQEPETSRRPSSVVAKLMGLEAFPDCTETCDTPPRISSCATNKNETTAGPSTNDEYKQHQSAASSQRTIKGSTLLQFRRDASIMNMTPYSRFSLEPIPWRQPEASQGSQLQNSKRSESSAKASKLSLSVYGEIEKRIADLEFKNSGKDLRALKQILDAMQRYKESLDIPRDQVSNSLSDNRSNSSLSESSIVKSPRLRQKDPTSTTVEMSNSTQGSKSPIFIMKPAKAARKTNSPASTEMSFQGKSGPSKFSPANRTNGIMGDKLDRQTAKGIGPAITHATDPISQPFHSVNKSNKKRTSKLMQSSKVRQVINGENATNSSNTAEAKSPRLQKKFGLERRSPPTSPSSDLSSNRRQQNRQSVELSSPSTTPRQKFSEISNQRRDFKHEVDLEVIHIDHSDRINGNTIQLKGINQNNAAEELSKESFMAEKTITAEQPSPVSVLDASFYREEPPSPVKKKSDISKDLDDALNTYDSSEENSEDLPLSSNTTKANFSSDTDLRTQNLVEILQQIDNSDERFTNFRDNKDPDHRYISEILLASGLLSSPSSSQVFHSSSYPINPKLFLALEQIKTNKMCFNIEHNAKNITGLNSPEQMQRKLIFDVVNDILAQKIILESSTLWRQPNQQAGRKLSGQLLLDELCTEIDKLQHKNTNVNLADENENLTSLLWEELMHCPTIYTNSYSEIPNVVLDIERLIFKDLITEVVRSELANHSGKHCRQLLLSK*

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