SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g06201

Feature Type:gene_model
Chromosome:Gm13
Start:6479552
stop:6481435
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g06201
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G03630AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74220.1); Has 87 Blast hits to 87 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). SoyBaseE_val: 1.00E-14ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1LWS5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWS5_SOYBN SoyBaseE_val: 1.00E-143ISS
UniRef100_Q9FL88UniRef Annotation by Michelle Graham. Most informative UniRef hit: Gb|AAF14825.1 n=3 Tax=Arabidopsis thaliana RepID=Q9FL88_ARATH SoyBaseE_val: 8.00E-08ISS

Expression Patterns of Glyma13g06201
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g06201 not represented in the dataset
Glyma13g06201 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g06201
ParalogEvidenceComments
Glyma19g03701 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g06201 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g056300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g06201
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g06201
>Glyma13g06201.1   sequence type=CDS   gene model=Glyma13g06201   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTTCTTGAATTATGAGAGCAAGAGAGGAAGTGGTAAGAAACTAAAAGTGCATTTTGATCTTCCTGAGGATGATGATTATCCCAATCACAAGCATTCAAGTTCTTCAGTTTCATCTGAATGCTCATTAGATTCAGATGATACTGACAATGACAATAGCATAGACAATGTTGATTCCAAGTATGGTTCCTATGGCTCTCCTGTGTGGAGCTTTCAAGGAGGATCAGTAACCCAATCTCCCCCAGTTCAGTTTTTGAGTTCTCCTGAGTATGATCCAAACAGAATCCCCTCTTCTATATTTAATAAACCTACAAGTCCTATGGAATGGAGTGTAGCCTCAAATGAATCAGTATTCAGCATACACTTAGGAAACAACAGTTTCTCGAGGGATTATGCTTTTCCATTCAACAACAAATCTGGGGAATTGCCTAGGACTAGTGATTTGCCCAGCATGCCTGCAACACTGCCACCTGTTCAAGAGGTGCCTGCTAAAGACAAAAATGTGGACATGGAAAGACACTCTGTGTCATCGGATTCATCAAGTGAAACCGCGGATTCGGTTAGGGGGCATGACCATAAGAAAACATCACATGAAACTGCTGGTTCAGTTGGGGAGGTTGTTGACCTCGTGAAAATAGAAAATTCAGAAGACATTGGCACTAATGAAGTAGTGTTGGACAAAACTCCAGATGATCATTCCAATGAAGCAAAGATCCCTAATGGGGAAGCCAATAACTATACAAGTGTCTTATACCGTTCGGTGGAAAGCGATATGAGCACACATTCATTGACAGCAGAAGGAGGAAGAACTAGTTCATCAACAGTAGAGTCAGAAAAGCAAGAAAAAAGTGAAAAGCATGAGCAGCAGCCAGAGAAGCCACAGCAGCCTCGCAGTCCTAAAACAGAAAAATCACCAAAGCAAAGTGGTAAAAGTTGGTGTTTCTCCTGCTCTTGTTCACCATGCTTTTGA
Predicted protein sequences of Glyma13g06201
>Glyma13g06201.1   sequence type=predicted peptide   gene model=Glyma13g06201   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFLNYESKRGSGKKLKVHFDLPEDDDYPNHKHSSSSVSSECSLDSDDTDNDNSIDNVDSKYGSYGSPVWSFQGGSVTQSPPVQFLSSPEYDPNRIPSSIFNKPTSPMEWSVASNESVFSIHLGNNSFSRDYAFPFNNKSGELPRTSDLPSMPATLPPVQEVPAKDKNVDMERHSVSSDSSSETADSVRGHDHKKTSHETAGSVGEVVDLVKIENSEDIGTNEVVLDKTPDDHSNEAKIPNGEANNYTSVLYRSVESDMSTHSLTAEGGRTSSSTVESEKQEKSEKHEQQPEKPQQPRSPKTEKSPKQSGKSWCFSCSCSPCF*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo