Glyma13g06190 - SoyBase

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Report for Sequence Feature Glyma13g06190

Feature Type:	gene_model
Chromosome:	Gm13
Start:	6475364
stop:	6476734
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g06190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02120	AT	Annotation by Michelle Graham. TAIR10: hydroxyproline-rich glycoprotein family protein \| chr3:377122-377577 FORWARD LENGTH=126	SoyBase	E_val: 1.00E-20	ISS
GO:0000226	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization	SoyBase	N/A	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0051329	GO-bp	Annotation by Michelle Graham. GO Biological Process: interphase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_D2DW75	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hydroxyproline-rich protein n=1 Tax=Phaseolus vulgaris RepID=D2DW75_PHAVU	SoyBase	E_val: 1.00E-60	ISS
UniRef100_I1LWS3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWS3_SOYBN	SoyBase	E_val: 2.00E-85	ISS

Expression Patterns of Glyma13g06190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g06190

Paralog	Evidence	Comments
Glyma19g03681	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g06190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g056500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g06190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g06190

Limit To All Plant Sequences

>Glyma13g06190.2   sequence type=transcript   gene model=Glyma13g06190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGACAACATATTTGAATCCCAATCCTTCATTCCTTCTAGCAACGCCTCACACAATTCGACCGTTGCAACCCCTTTTTCTCAAACGGTCACTTAATCTTGCTTCCACCATTTTCATCATATACTTCTTCCCACACACCTACATTCATTCCCATTGAACTTGTAGTTTCCATCAACACATTAATTTTCCTTGTTCCGTGGTGGCACACACCATAATCTCATGGAAAAGGAAAACATGCTCAAAACGCCTCCAAAAGTTCCAATTCAAGATCGAACACCCGAACCTGAATGCAAAACACCAACTCCAGTTCAACAACAAGACCCCAATGATCATAACTCCTCAAATGAATTGCGCAAGCCTGTTACCCCAGATCGTCTTAGAGTCCCCAAGGCATTCAAATACCCAGAAAGATATACAAGCCCAACAGATTTGATGATGTCACCAGTAACCAAAGGCCTTCTTGCTAGAACTAGAAGGGGTGGTGGTGCGGTGTTACCACCTGGGGGTAAAAATCGACCAAAGGTAAACCCAATGAGGCAATAACATATTGTTCTGCATTCACTTTTTCTAGCTATGCTACTTTACTCTTTTTTGGTACTTGCAATTTGCACAGTGCTTGTATATGTATGTCATTTTCAACTATTGCAGATTCTAGACATGCCCTTGAAGGATGTCGGTCCTATCCAGAACAAGCTTCCAATGCTTATTGATGAGAAGATCAACTCAGCTTGAAGGATTCAAAGGACTTTTGTTCAACATGATAATTCATTTGACAGTGGTTCAAAGGGAGTTTAAAGATGATGATGTAATAACAATAACATCACACAGAGAGAGAAAGAGAGAGTTTATCTCCTTGTTCCCATGTTAAACAACTCTGTTCTGAGATTATAAGCTTATGAAGTTTGTGATGCTCAATTTTCTTCTCAAAATAGCCTTTCTAGCAATAATGTGTCCGTGTTAATTAAAAAATGGCTTAAATACATTTTTCTTTCTTATAGTTGAATCTTAATAATTTTTTTTGGTTACAGAA

Coding sequences of Glyma13g06190

Limit To All Plant Sequences

>Glyma13g06190.1   sequence type=CDS   gene model=Glyma13g06190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAAGGAAAACATGCTCAAAACGCCTCCAAAAGTTCCAATTCAAGATCGAACACCCGAACCTGAATGCAAAACACCAACTCCAGTTCAACAACAAGACCCCAATGATCATAACTCCTCAAATGAATTGCGCAAGCCTGTTACCCCAGATCGTCTTAGAGTCCCCAAGGCATTCAAATACCCAGAAAGATATACAAGCCCAACAGATTTGATGATGTCACCAGTAACCAAAGGCCTTCTTGCTAGAACTAGAAGGGGTGGTGGTGCGGTGTTACCACCTGGGGGTAAAAATCGACCAAAGATTCTAGACATGCCCTTGAAGGATGTCGGTCCTATCCAGAACAAGCTTCCAATGCTTATTGATGAGAAGATCAACTCAGCTTGA

>Glyma13g06190.2   sequence type=CDS   gene model=Glyma13g06190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAAGGAAAACATGCTCAAAACGCCTCCAAAAGTTCCAATTCAAGATCGAACACCCGAACCTGAATGCAAAACACCAACTCCAGTTCAACAACAAGACCCCAATGATCATAACTCCTCAAATGAATTGCGCAAGCCTGTTACCCCAGATCGTCTTAGAGTCCCCAAGGCATTCAAATACCCAGAAAGATATACAAGCCCAACAGATTTGATGATGTCACCAGTAACCAAAGGCCTTCTTGCTAGAACTAGAAGGGGTGGTGGTGCGGTGTTACCACCTGGGGGTAAAAATCGACCAAAGGTAAACCCAATGAGGCAATAA

Predicted protein sequences of Glyma13g06190

Limit To All Plant Sequences

>Glyma13g06190.1   sequence type=predicted peptide   gene model=Glyma13g06190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKENMLKTPPKVPIQDRTPEPECKTPTPVQQQDPNDHNSSNELRKPVTPDRLRVPKAFKYPERYTSPTDLMMSPVTKGLLARTRRGGGAVLPPGGKNRPKILDMPLKDVGPIQNKLPMLIDEKINSA*

>Glyma13g06190.2   sequence type=predicted peptide   gene model=Glyma13g06190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKENMLKTPPKVPIQDRTPEPECKTPTPVQQQDPNDHNSSNELRKPVTPDRLRVPKAFKYPERYTSPTDLMMSPVTKGLLARTRRGGGAVLPPGGKNRPKVNPMRQ*

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