Glyma13g06170 - SoyBase

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Report for Sequence Feature Glyma13g06170

Feature Type:	gene_model
Chromosome:	Gm13
Start:	6466760
stop:	6469427
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g06170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02100	AT	Annotation by Michelle Graham. TAIR10: UDP-Glycosyltransferase superfamily protein \| chr3:368840-370484 REVERSE LENGTH=464	SoyBase	E_val: 8.00E-133	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008194	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glycosyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
KOG1192	KOG	UDP-glucuronosyl and UDP-glucosyl transferase	JGI		ISS
PTHR11926	Panther	GLUCOSYL/GLUCURONOSYL TRANSFERASES	JGI		ISS
PTHR11926:SF15	Panther	UDP-GLUCURONOSYLTRANSFERASE RELATED	JGI		ISS
PF00201	PFAM	UDP-glucoronosyl and UDP-glucosyl transferase	JGI		ISS
UniRef100_D2DW78	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucosyl transferase n=1 Tax=Phaseolus vulgaris RepID=D2DW78_PHAVU	SoyBase	E_val: 0	ISS
UniRef100_I1LWS2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWS2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g06170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g06170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g056600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g06170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g06170

Limit To All Plant Sequences

>Glyma13g06170.1   sequence type=CDS   gene model=Glyma13g06170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCATTCCAACTGTGCTAGCTTTACCTTATCCAGCACAAGGTCATGTCAATCCCCTGATGACTCTCTCACAGAAGTTGGTTGAGCATGGATGCAAAGTCTTTTTTGTGAACACAGACTTTGACCACAAGCGAGTGGTGAGTTCCATGGTGGAGCAACTAGATAGCCTTGACGAATCACTACTGAAGTTGGTCTCAATCCCTGATGGTTTAGGACCTGATGATGATAGAAACGATTTGAGCAAGTTATGTGATTCTTTGCTGAACAACATGCCTGCTATGCTTGAGAAGCTCATAGAGGATATTCACTTAAAAGGTGACAATAGAATCAGCCTTATTGTTGCGGATGTGTGCATGGGATGGGCGTTGGATGTTGGGAGTAAATTGGGAATCAAAGGAGCCCTGTTGTGCCCTTCATCAGCAGCTTTTTTTGCCCTGCTGTACAACGTCCCTAGGCTTATTGATGATGGGATCATAGATTCTGATGGTGGATTAAGAATAACTACTAAAAGGACAATTCAGATATCACAAGGTATGCCTGAGATGGACCCGGGAGAGCTTTTTTGGTTGAATATGGGTGACACCATAAATGGTAAGATAGTACTCAATTATCTGATGCAGTGTACACAGAGATTGAATATGACAGAATGGTGGCTTTGCAACACCACATATGAACTTGAACATGCGCCATTATCATCTATTCCTAAGCTTGTACCAATTGGTCCTTTGTTGAGAAGTTATGATGATACAATTGCAACTGCAAAAACAATCGGACAATATTGGGAAGAAGATCTATCCTGCATGAGTTGGCTTGATCAACAACCTCATGGTTCTGTCTTGTATGTTGCCTTTGGTAGTTTCACTCATTTTGACCAAAACCAATTCAATGAACTAGCTCTTGGACTTGACCTCACCAATAGACCTTTTCTTTGGGTTGTGCGTCAAGACAACAAGAGGGTATACCCTAATGAATTCTTGGGGTGTAAAGGTAAGATTGTGAGTTGGGCTCCTCAACAAAAGGTGCTAAGCCACCCTGCTATAGCATGTTTTGTCACCCATTGTGGTTGGAATTCTACCATAGAAGGTGTGTCCAATGGGTTGCCTCTCTTGTGTTGGCCATATTTTGGAGACCAAATATGTAACAAAACGTACATTTGTGATGAGTTGAAGGTTGGGTTGGGTTTTGACTCGGATAAAAATGGACTCGTGTCACGAATGGAGTTAGAAAGGAAAGTGGACCAAATCCTTAATGATGAGAACATAAAATCAAGGTCTCTGGAATTGAAGGATAAAGTCATGAACAACATAGCCAAAGCAGGTCGTTCGTTAGAGAACCTTAATAGGTTTGTCAAGTGGCTTAAAGAATAA

Predicted protein sequences of Glyma13g06170

Limit To All Plant Sequences

>Glyma13g06170.1   sequence type=predicted peptide   gene model=Glyma13g06170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIPTVLALPYPAQGHVNPLMTLSQKLVEHGCKVFFVNTDFDHKRVVSSMVEQLDSLDESLLKLVSIPDGLGPDDDRNDLSKLCDSLLNNMPAMLEKLIEDIHLKGDNRISLIVADVCMGWALDVGSKLGIKGALLCPSSAAFFALLYNVPRLIDDGIIDSDGGLRITTKRTIQISQGMPEMDPGELFWLNMGDTINGKIVLNYLMQCTQRLNMTEWWLCNTTYELEHAPLSSIPKLVPIGPLLRSYDDTIATAKTIGQYWEEDLSCMSWLDQQPHGSVLYVAFGSFTHFDQNQFNELALGLDLTNRPFLWVVRQDNKRVYPNEFLGCKGKIVSWAPQQKVLSHPAIACFVTHCGWNSTIEGVSNGLPLLCWPYFGDQICNKTYICDELKVGLGFDSDKNGLVSRMELERKVDQILNDENIKSRSLELKDKVMNNIAKAGRSLENLNRFVKWLKE*

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