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Report for Sequence Feature Glyma13g06151

Feature Type:gene_model
Chromosome:Gm13
Start:6452998
stop:6455913
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g06151
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G02100AT Annotation by Michelle Graham. TAIR10: UDP-Glycosyltransferase superfamily protein | chr3:368840-370484 REVERSE LENGTH=464 SoyBaseE_val: 1.00E-126ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008194GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-glycosyltransferase activity SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
GO:0016758GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups SoyBaseN/AISS
KOG1192 KOG UDP-glucuronosyl and UDP-glucosyl transferase JGI ISS
PTHR11926Panther GLUCOSYL/GLUCURONOSYL TRANSFERASES JGI ISS
PTHR11926:SF15Panther UDP-GLUCURONOSYLTRANSFERASE RELATED JGI ISS
PF00201PFAM UDP-glucoronosyl and UDP-glucosyl transferase JGI ISS
UniRef100_D2DW77UniRef Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucosyl transferase n=1 Tax=Phaseolus vulgaris RepID=D2DW77_PHAVU SoyBaseE_val: 0ISS
UniRef100_UPI000233AB11UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233AB11 related cluster n=1 Tax=unknown RepID=UPI000233AB11 SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g06151
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g06151 not represented in the dataset
Glyma13g06151 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g06151
ParalogEvidenceComments
Glyma19g03620 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g06151 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g056800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g06151
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g06151
>Glyma13g06151.1   sequence type=CDS   gene model=Glyma13g06151   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCATTCCAACTGTGCTAGCTTTACCATATCCAGCTCAAGGGCATGTCAATCCCTTGATGACCCTCTCAGAAAAGTTGGTTGAGCATGGTTGCAAAGTCATTTTTGTGAACACGGACTTCGACCACAAGCGAGTGGTAGGTTCCATGGGCGAGCAACAAGATAGCCTTGACGAATCACTTCTAAAGTTGGTTTCTATCCCCGATGGTTTAGGACCTGATGATGACCGAAACGATGCGGGCAAGTTATGTGATGCTATGCAAAACACCATGCCAACTATGCTTGAGAAGCTCATAGAGGATGTTCATTTGAATGGTGACAACAGAATCAGCTTAATTGTTGCAGATTTCTGCATGGGATGGGCTTTGGATGTTGGGAGTAAACTGGGAATCAAAGGAGCCCTGTTGTGGGCTTCACCAGCAGCTTTATTTGGCCTTCTATACAACATCCCCAAGCTTATCGATGATGGGATCATAGATTCTGATGGTGGACTAACACTAACCACGAAAAAGACAATTCACATATCACAAGGTATACCTGAGATGGACCCACGAGACTTTTTTTGGTTGAATATGGGCGACACAATAAACGGTAAAATAGTAATTAAATATTTGATTCAGTGTACACGAAGTTTGAATCTGACTGAATGGTGGCTTTGCAACACCACAAATGAACTTGAACCTGGGCCATTATCCTCTATTCCTAAGCTTGTGCCAATTGGTCCATTGTTGAGAAGTTATGGTGACACAATTGCAACTGCAAAATCAATCGGACAATACTGGGAAGAAGATCTCTCTTGTATGAGTTGGCTCGACCAACAACCTCATGGTTCTGTCTTGTATGTTGCCTTTGGTAGTTTCACTCATTTTGATCAAAACCAATTCAATGAACTAGCTCTTGGAATTGACCTCACCAATAGACCTTTTCTTTGGGTTGTGCGTCAAGACAATAAAAGGGTATACCCTAATGAATTCTTGGGAAGTAAAGGTAAGATTGTTGGTTGGGCTCCTCAACAGAAGGTGCTAAACCACCCTACCATAGCTTGTTTTCTTACCCATTGTGGTTGGAATTCTACCATGGAAGGTTTGTCTAATGGGGTTCCTTTATTGTGCTGGCCATATTTTGGAGACCAACTTTATAACAAAGCATATATTTGTGATGAGTTGAAGGTCGGGCTGGGAGTTGACAAAGATAAAAATGGACTCGTGTCACGCATGGAGTTAAAAAGAAAAGTAGACCAACTCTTTAATGATGAGAACATAAATTCAAGGTCTCTGGAATTGAAGGACAAAGTTATGAAAAACATAACCAATGGAGGTCGATCATTAGAGAATCTTAATAGGCTTGTCAACTGGCTTAAAGAATAA
Predicted protein sequences of Glyma13g06151
>Glyma13g06151.1   sequence type=predicted peptide   gene model=Glyma13g06151   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSIPTVLALPYPAQGHVNPLMTLSEKLVEHGCKVIFVNTDFDHKRVVGSMGEQQDSLDESLLKLVSIPDGLGPDDDRNDAGKLCDAMQNTMPTMLEKLIEDVHLNGDNRISLIVADFCMGWALDVGSKLGIKGALLWASPAALFGLLYNIPKLIDDGIIDSDGGLTLTTKKTIHISQGIPEMDPRDFFWLNMGDTINGKIVIKYLIQCTRSLNLTEWWLCNTTNELEPGPLSSIPKLVPIGPLLRSYGDTIATAKSIGQYWEEDLSCMSWLDQQPHGSVLYVAFGSFTHFDQNQFNELALGIDLTNRPFLWVVRQDNKRVYPNEFLGSKGKIVGWAPQQKVLNHPTIACFLTHCGWNSTMEGLSNGVPLLCWPYFGDQLYNKAYICDELKVGLGVDKDKNGLVSRMELKRKVDQLFNDENINSRSLELKDKVMKNITNGGRSLENLNRLVNWLKE*






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