Glyma13g06140 - SoyBase

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Report for Sequence Feature Glyma13g06140

Feature Type:	gene_model
Chromosome:	Gm13
Start:	6439879
stop:	6447282
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g06140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15550	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr5:5059051-5062003 REVERSE LENGTH=433	SoyBase	E_val: 0	ISS
GO:0000478	GO-bp	Annotation by Michelle Graham. GO Biological Process: endonucleolytic cleavage involved in rRNA processing	SoyBase	N/A	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006606	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into nucleus	SoyBase	N/A	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0051604	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein maturation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005834	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG0313	KOG	Microtubule binding protein YTM1 (contains WD40 repeats)	JGI		ISS
PTHR19855	Panther	WD40 REPEAT PROTEIN 12, 37	JGI		ISS
PTHR19855:SF11	Panther	WD40 REPEAT PROTEIN 12	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
PF08154	PFAM	NLE (NUC135) domain	JGI		ISS
UniRef100_G7KYJ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribosome biogenesis protein wdr12 n=2 Tax=Medicago truncatula RepID=G7KYJ6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LWS1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWS1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g06140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g06140

Paralog	Evidence	Comments
Glyma19g03590	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g06140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g056900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g06140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g06140

Limit To All Plant Sequences

>Glyma13g06140.2   sequence type=transcript   gene model=Glyma13g06140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGTTTGCTTTGACAGCATCAATGTGTGTATATCAGTGAAGCAAATAAATGCTATGCTTGTTATGGTGATAGTGTCAAATGGGATGATGCAGTGGAATGGGGGGTGCTTGTGAAGGAAGTTGCGGCTGTAGTATACTTGTTGCTAAAAAGGGGATAGTTCAGGTTGTCAGTACAATATGACTGTAACAGTGGAAAGGATATTGGAAATTGAGTACGCAAGGGCTGTGGCTCCGCGGAAGGAGGAGGACCCTTCTCTACATGATGATTGGGTCAGTGCTGTTGATGGTTCTTCTTCTCGGTTCTTTTTGACCGGATGTTATGATGGTTTAGGGAGGGTATGGAAAGGTGCTGGATTATGTACCCATATATTGGAGGGACATAGTGACGCAATTACTTCCATTAGTATCATCAATCCCAAAGGTGAGGAAACTGTTACAGTAGCTACTGCTTCGAAAGACAGGACATTGAGGCTATGGAAGCTCAATGCTGGGGATCATGTAAACAATCCTATGAGGGTTAGGGCTTACAAAATCTTGCGTGGTCATAAGTCTTCTGTACAGTGTGTTGCAGTGCAGACTGCTGGAGAGATGGTTTGTTCAGCTTCTTGGGATTGCACCATCAATCTATGGCAAACTAATGACTTTAATGCGGAAGATGACCTAGTGTCTAAAAAGAGAAAAATTGGAGCTCAAGTTGAGGAGTCCCAACTAGAGGGAGAGGCTTTTACTACCCTTGTGGGCCATACACAGTGTGTGTCTGCTGTGGTTTGGCCACAACGGGAGTCAATTTACTCTGCATCTTGGGATCATTCTATTAGGAAATGGGATGTTGAGACAGGAAAAAACTTGACAGATTTATTCTGTGGGAAGGTTCTCAACTGCCTTGATATTGGTGGGGAAGGTTCTACTCTGATAGCTGCTGGTGGTTCTGATCCTGTCATTAGGATTTGGGATCCTCGTAAACCAGGCACTTCTGCTCCTGTTTTTCAGTTTTCTTCTCATATGTCTTGGGTTTCGGCTTGCAAATGGCATGATCAGTCTTGGTTTCATTTACTTTCTGCATCCTATGATGGGAAAGTTATGTTGTGGGATCTGAGAACTGCGTGGCCTCTTTCAGTCATTGAATCGCACAGTGATAAGGTATTGTCTGCTGATTGGTGGAAAAGTAACAGTGTTATCAGTGGTGGAGCAGACTCAAAACTTTGCATTTCTTCAGAAATTCCTGTACAATAGGGTAAACTTCGTTCATATTATGGCTGTCTTTTGTGATGGTGGGATAGGGGCAGATATTTATTATATGTAGAGAACGGGTCAAGTTTTTTGGCCAATTTTGTCTTAGGCACAACTGCCAAGTGTTTTATCAGTTGTGAACAAAGTCTTATTTTGTGTTGCTAACGGCTATGGATGTAAGCACTTGAAATTATTCATATTTTGCTACTCATTGTGCATGCAAATCTTCAACATTTTACTTATTTGTGTTGTACAGTTTGTTCATTTGGATTGTTTTAGCATTCATATTGCTAAAATACTCTACAGTAATCCTCCATCATAAAGCATAGTGCTGTGGCATCTTGTTGGAGGTTTGCTTTTG

Coding sequences of Glyma13g06140

Limit To All Plant Sequences

>Glyma13g06140.1   sequence type=CDS   gene model=Glyma13g06140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATATGAACGAAGAGAGTGGTGAAGGAAGCGCGAGGAGGGTCCAAGTGCGCTTCGTGACGAAGTTAGGCGAGCCGTACAAAGTTCCGACCACTGCCATCGCCATCCCCGCCGACCTCGCTCGATTAGGCCTCTCCTCACTCGTCAACGCACTCCTTCAATCCAACGACGCTGACCATCAGCCGGAGCCGTTTGATTTTTTAATCGATGGCGAGTTCGTCCGGATGTCGCTCGAGCAGTTTCTTTTGGCCAAGGGAATCTCTGCGGAAAGGATATTGGAAATTGAGTACGCAAGGGCTGTGGCTCCGCGGAAGGAGGAGGACCCTTCTCTACATGATGATTGGGTCAGTGCTGTTGATGGTTCTTCTTCTCGGTTCTTTTTGACCGGATGTTATGATGGTTTAGGGAGGGTATGGAAAGGTGCTGGATTATGTACCCATATATTGGAGGGACATAGTGACGCAATTACTTCCATTAGTATCATCAATCCCAAAGGTGAGGAAACTGTTACAGTAGCTACTGCTTCGAAAGACAGGACATTGAGGCTATGGAAGCTCAATGCTGGGGATCATGTAAACAATCCTATGAGGGTTAGGGCTTACAAAATCTTGCGTGGTCATAAGTCTTCTGTACAGTGTGTTGCAGTGCAGACTGCTGGAGAGATGGTTTGTTCAGCTTCTTGGGATTGCACCATCAATCTATGGCAAACTAATGACTTTAATGCGGAAGATGACCTAGTGTCTAAAAAGAGAAAAATTGGAGCTCAAGTTGAGGAGTCCCAACTAGAGGGAGAGGCTTTTACTACCCTTGTGGGCCATACACAGTGTGTGTCTGCTGTGGTTTGGCCACAACGGGAGTCAATTTACTCTGCATCTTGGGATCATTCTATTAGGAAATGGGATGTTGAGACAGGAAAAAACTTGACAGATTTATTCTGTGGGAAGGTTCTCAACTGCCTTGATATTGGTGGGGAAGGTTCTACTCTGATAGCTGCTGGTGGTTCTGATCCTGTCATTAGGATTTGGGATCCTCGTAAACCAGGCACTTCTGCTCCTGTTTTTCAGTTTTCTTCTCATATGTCTTGGGTTTCGGCTTGCAAATGGCATGATCAGTCTTGGTTTCATTTACTTTCTGCATCCTATGATGGGAAAGTTATGTTGTGGGATCTGAGAACTGCGTGGCCTCTTTCAGTCATTGAATCGCACAGTGATAAGGTATTGTCTGCTGATTGGTGGAAAAGTAACAGTGTTATCAGTGGTGGAGCAGACTCAAAACTTTGCATTTCTTCAGAAATTCCTGTACAATAG

>Glyma13g06140.2   sequence type=CDS   gene model=Glyma13g06140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTGTAACAGTGGAAAGGATATTGGAAATTGAGTACGCAAGGGCTGTGGCTCCGCGGAAGGAGGAGGACCCTTCTCTACATGATGATTGGGTCAGTGCTGTTGATGGTTCTTCTTCTCGGTTCTTTTTGACCGGATGTTATGATGGTTTAGGGAGGGTATGGAAAGGTGCTGGATTATGTACCCATATATTGGAGGGACATAGTGACGCAATTACTTCCATTAGTATCATCAATCCCAAAGGTGAGGAAACTGTTACAGTAGCTACTGCTTCGAAAGACAGGACATTGAGGCTATGGAAGCTCAATGCTGGGGATCATGTAAACAATCCTATGAGGGTTAGGGCTTACAAAATCTTGCGTGGTCATAAGTCTTCTGTACAGTGTGTTGCAGTGCAGACTGCTGGAGAGATGGTTTGTTCAGCTTCTTGGGATTGCACCATCAATCTATGGCAAACTAATGACTTTAATGCGGAAGATGACCTAGTGTCTAAAAAGAGAAAAATTGGAGCTCAAGTTGAGGAGTCCCAACTAGAGGGAGAGGCTTTTACTACCCTTGTGGGCCATACACAGTGTGTGTCTGCTGTGGTTTGGCCACAACGGGAGTCAATTTACTCTGCATCTTGGGATCATTCTATTAGGAAATGGGATGTTGAGACAGGAAAAAACTTGACAGATTTATTCTGTGGGAAGGTTCTCAACTGCCTTGATATTGGTGGGGAAGGTTCTACTCTGATAGCTGCTGGTGGTTCTGATCCTGTCATTAGGATTTGGGATCCTCGTAAACCAGGCACTTCTGCTCCTGTTTTTCAGTTTTCTTCTCATATGTCTTGGGTTTCGGCTTGCAAATGGCATGATCAGTCTTGGTTTCATTTACTTTCTGCATCCTATGATGGGAAAGTTATGTTGTGGGATCTGAGAACTGCGTGGCCTCTTTCAGTCATTGAATCGCACAGTGATAAGGTATTGTCTGCTGATTGGTGGAAAAGTAACAGTGTTATCAGTGGTGGAGCAGACTCAAAACTTTGCATTTCTTCAGAAATTCCTGTACAATAG

Predicted protein sequences of Glyma13g06140

Limit To All Plant Sequences

>Glyma13g06140.1   sequence type=predicted peptide   gene model=Glyma13g06140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMNEESGEGSARRVQVRFVTKLGEPYKVPTTAIAIPADLARLGLSSLVNALLQSNDADHQPEPFDFLIDGEFVRMSLEQFLLAKGISAERILEIEYARAVAPRKEEDPSLHDDWVSAVDGSSSRFFLTGCYDGLGRVWKGAGLCTHILEGHSDAITSISIINPKGEETVTVATASKDRTLRLWKLNAGDHVNNPMRVRAYKILRGHKSSVQCVAVQTAGEMVCSASWDCTINLWQTNDFNAEDDLVSKKRKIGAQVEESQLEGEAFTTLVGHTQCVSAVVWPQRESIYSASWDHSIRKWDVETGKNLTDLFCGKVLNCLDIGGEGSTLIAAGGSDPVIRIWDPRKPGTSAPVFQFSSHMSWVSACKWHDQSWFHLLSASYDGKVMLWDLRTAWPLSVIESHSDKVLSADWWKSNSVISGGADSKLCISSEIPVQ*

>Glyma13g06140.2   sequence type=predicted peptide   gene model=Glyma13g06140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTVTVERILEIEYARAVAPRKEEDPSLHDDWVSAVDGSSSRFFLTGCYDGLGRVWKGAGLCTHILEGHSDAITSISIINPKGEETVTVATASKDRTLRLWKLNAGDHVNNPMRVRAYKILRGHKSSVQCVAVQTAGEMVCSASWDCTINLWQTNDFNAEDDLVSKKRKIGAQVEESQLEGEAFTTLVGHTQCVSAVVWPQRESIYSASWDHSIRKWDVETGKNLTDLFCGKVLNCLDIGGEGSTLIAAGGSDPVIRIWDPRKPGTSAPVFQFSSHMSWVSACKWHDQSWFHLLSASYDGKVMLWDLRTAWPLSVIESHSDKVLSADWWKSNSVISGGADSKLCISSEIPVQ*

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