SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g06080

Feature Type:gene_model
Chromosome:Gm13
Start:6372042
stop:6378192
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g06080
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15530AT Annotation by Michelle Graham. TAIR10: biotin carboxyl carrier protein 2 | chr5:5038955-5040437 FORWARD LENGTH=255 SoyBaseE_val: 1.00E-67ISS
GO:0006633GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process SoyBaseN/AISS
GO:0009317GO-cc Annotation by Michelle Graham. GO Cellular Compartment: acetyl-CoA carboxylase complex SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0003989GO-mf Annotation by Michelle Graham. GO Molecular Function: acetyl-CoA carboxylase activity SoyBaseN/AISS
GO:0009374GO-mf Annotation by Michelle Graham. GO Molecular Function: biotin binding SoyBaseN/AISS
PTHR23151Panther DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED JGI ISS
PTHR23151:SF25Panther BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2), BIOTIN JGI ISS
PF00364PFAM Biotin-requiring enzyme JGI ISS
UniRef100_E6Y6R0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Biotin carboxyl carrier protein 2-2 n=1 Tax=Arachis hypogaea RepID=E6Y6R0_ARAHY SoyBaseE_val: 8.00E-109ISS
UniRef100_I1LWR8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWR8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g06080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g06080
ParalogEvidenceComments
Glyma19g03530 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g06080 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g057400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g06080
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g06080
>Glyma13g06080.1   sequence type=CDS   gene model=Glyma13g06080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCTTTCTCGGTCCCATGCCCCAAGTGTCCTACAACTTCTTCTTCTCCCCCTTTGGGGTTGAAATCTCTAAATGTTTCATTTCAAAGGGTGTTGAGCTTGAAGCCTTCTCTTTCATTCGGATCTTTGTCTGCTGAATCTGCTGCATCAAGGATTCAGTGCCTTAACAGGAAGCAATTTTCTGTTCTGAAGGCTACTAAAGTTGAAAATTCCAATTCTGCCCCTGTAATGGTCAATGGACCTAATGTTGCTTCATCGAAAGAAAAAGAAGTGCATAATGGAAAACTCTCTGGTGGTACTATCCCAGATGATGCTTCAATTATTGCATTCATGTCTCAAGTTTCAGACCTTGTAAAACTCGTGGATTCGAGAGATATTGTGGAACTTCAACTTAAGCAATCAGACTGTGAGCTCATGATAAGAAAAAAAGAAGCATTGCAGCCTCCACCAGTTATAGCCCCAACATCCCCACCAATGCACTATGCCACAGTTCCTTCTCCGCCACCACCACCAGCAGCTGCTCCTGCTAGCTCTGCACCTCCAAAAGCAGTTCCTGCCTTGCCTTCCCCTGCAAAAGCAGGCACATCTTCTCACCCAACGCTGAAATGTCCGATGGCAGGAACCTTCTACAGGAGTCCAGCACCTGGTGAACCTGCATTTGTCAAGGTGGGAGATAAAGTGCAGAAAGGCCAGGTTATTTGCATTATCGAGGCTATGAAACTGATGAATGAAATTGAGGCTGATCAGTCAGGAACAATAGCTGAGGTATTAGCTGAGGATGGGAAACCAGTCAGTGTGGACACGCCTCTTTTTGTAATAGTTCCATGA
Predicted protein sequences of Glyma13g06080
>Glyma13g06080.1   sequence type=predicted peptide   gene model=Glyma13g06080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASFSVPCPKCPTTSSSPPLGLKSLNVSFQRVLSLKPSLSFGSLSAESAASRIQCLNRKQFSVLKATKVENSNSAPVMVNGPNVASSKEKEVHNGKLSGGTIPDDASIIAFMSQVSDLVKLVDSRDIVELQLKQSDCELMIRKKEALQPPPVIAPTSPPMHYATVPSPPPPPAAAPASSAPPKAVPALPSPAKAGTSSHPTLKCPMAGTFYRSPAPGEPAFVKVGDKVQKGQVICIIEAMKLMNEIEADQSGTIAEVLAEDGKPVSVDTPLFVIVP*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo