Glyma13g06040 - SoyBase

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Report for Sequence Feature Glyma13g06040

Feature Type:	gene_model
Chromosome:	Gm13
Start:	6339187
stop:	6349183
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g06040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G29320	AT	Annotation by Michelle Graham. TAIR10: Glycosyl transferase, family 35 \| chr3:11252871-11257587 FORWARD LENGTH=962	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0009266	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0004645	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphorylase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0030170	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding	SoyBase	N/A	ISS
KOG2099	KOG	Glycogen phosphorylase	JGI		ISS
PTHR11468	Panther	GLYCOGEN PHOSPHORYLASE	JGI		ISS
PF00343	PFAM	Carbohydrate phosphorylase	JGI		ISS
UniRef100_I1LWR4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Phosphorylase n=1 Tax=Glycine max RepID=I1LWR4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1LWR4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphorylase n=1 Tax=Glycine max RepID=I1LWR4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g06040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g06040

Paralog	Evidence	Comments
Glyma19g03490	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g06040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g057800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g06040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g06040

Limit To All Plant Sequences

>Glyma13g06040.1   sequence type=CDS   gene model=Glyma13g06040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCTTCCGCGACAATGCGGTTCTCCGCGACCTCCACCGGAGCCGAGGCGGCTCTTCCTCGCCGCAACTCCGTCGCCGGATTCATCGGCGTCGCGGCGAGATCCTCCGCCAAATCGAGGCTCCGCTTCATCGGAAGGAACGCGAACTTGAGCCTCCGGAGGAGGATGAGCTCTTTCCCCGTTGTGAAGTGCGTCTCTGGAAGTGAGGCCAAGGCGCAGGATCCAGTGGCAAAACAACAAGAAGCTACAACCTCTCTCAGCTCCTTCTCGCCAGATGCTTCATCTATTGCCTCAAGTATTAAATACCATGCAGAGTTCACTCCATTGTTTTCTCCAGAGAATTTTGATCTTCCTCAGGCTTTTCTTGCAACTGCACAAAGTGTTCGAGATGCTCTCATTATAAACTGGAATGCTACCTATGATTACTATGAGAAGCTGAATGTTAAGCAGGCATATTACCTTTCGATGGAATTTTTGCAGGGTAGAGCACTATTAAATGCAATAGGAAATCTAGAGTTAACTGGTCCCCATGCTGAGGCTTTGAGCAAGCTCGGGCATAAATTAGAAAATGTGGCATACCAGGAGCCAGATGCTGCACTTGGAAATGGTGGTCTTGGGCGTCTTGCTTCATGTTTCTTGGACTCTTTGGCCACCTTGAACTATCCAGCTTGGGGTTATGGATTGAGATATAAGTATGGCTTATTTAAACAGCGAATAACCAAAGATGGGCAGGAGGAAGTTGCTGATGATTGGCTTGAGATGGGCAATCCCTGGGAGATTATTAGAAATGATGTTTCATATCCTGTAAAGTTCTATGGCAAGGTTGTTTCAGGGTCAGATGGTAAAAAACATTGGATTGGAGGAGAAGATATAAAAGCTGTTGCACATGATGTTCCCATACCAGGATATAAAACTAAGACTACAATCAACTTGAGACTTTGGTCTACAAAAGCTGCATCGGAAGAATTTGATTTGTCTGCTTTTAATGCTGGAAGGCATACTGAAGCATCTGAGGCTCTAGCAAATGCTGAAAAGATATGCTATATACTCTACCCTGGGGATGAATCAATAGAGGGCAAGATCCTTCGTCTCAAGCAACAATATACTTTATGTTCTGCTTCTCTTCAAGACATCATTGCTCGTTTTGAGAGAAGATCAGGGACAAATGTGAATTGGGAAGAGTTTCCTGAAAAGGTTGCAGTGCAGATGAATGATACACACCCAACCTTGTGCATCCCAGAACTGATGAGAATCTTAATAGATGTTAAGGGCTTAAGTTGGAAGGATGCTTGGAATATTACACAAAGGACTGTAGCATATACAAACCATACTGTTCTTCCGGAGGCATTAGAGAAATGGAGCTTGGATCTTATGCAAAAACTGCTTCCACGCCATATTGAGATTATAGAAATGATTGATGAGGAGCTGATTCGGACCATAATTGCAGAATATGGCACAGAGAATTCAGACTTGCTGGAGAAAAAATTGAAGGAAATGAGAATACTAGAAAATGTTGAATTGCCTGCAGAATTTGCAGATATAGTGGTTAAGTCCAAAGAGGCCATTGATATTCCTAGTGAGGAGCTGCAAAGTTCTGAACAAGCAGAAGTAGAAGAAAGAAAAGATGATGAAGTGGAAGCAGTTGCTAAAAAGAATGGAACAGATGAAAGTTCCATTGAGGATGAGAAAGAAGAGTTGCCTGAGCCAGTACCAGAACCACCAAAATTGGTTCGTATGGCAAATCTGTGTGTTGTAGGTGGTCATGCAGTGAATGGGGTTGCAGAGATACATAGTGAAATTGTAAAAGATGAAGTTTTCAATGCGTTTTATAAGTTGTGGCCTGAGAAGTTCCAAAACAAAACAAATGGTGTGACACCAAGGAGATGGATCAGGTTCTGCAATCCAGATCTGAGTAAAATAATAACCGAGTGGATAGGCACTGAGGATTGGGTCCTAAATACTGGAAAATTGGCGGAGCTACGGAAGTTTGTAGACAATGAGGATCTACAAGTGCAGTGGAGGGAAGCAAAGAGGAGTAACAAAGTTAAAGTGGCAGCATTCATCAGAGAAAAAACAGGGTATTCTGTCAGTCCTGATGCAATGTTTGACATCCAGGTGAAGAGAATCCATGAATATAAGCGACAATTATTGAACATATTTGGAATTGTTTACCGATACAAGAAGATGAAAGAAATGAGTGCTGCAGAAAGGAAAGCAAATTTTGTTCCTAGAGTTTGTATATTTGGGGGAAAAGCATTTGCTACATATGTGCAAGCCAAGAGAATTGTGAAATTTATTACAGATGTTGGGGCAACAGTAAATCATGATCCTGAAATAGGAGATCTACTTAAGGTTGTTTTTGTCCCTGATTACAATGTCAGTGTTGCTGAGATGCTTATTCCAGCAAGTGAATTGTCACAACATATCAGTACTGCTGGAATGGAGGCAAGTGGAACTAGCAACATGAAATTTGCCATGAATGGCTGCATATTGATTGGAACTTTAGATGGGGCCAATGTTGAAATAAGGGAAGAGGTTGGTGCTGACAACTTTTTCCTCTTTGGTGCCAAGGCTCATGAAATTGCTGGGCTGAGGAAAGAACGAGCAGAGGGAAAGTTTGTCCCTGATCCAAGATTTGAAGAAGTTAAAGAATTTGTCAGAAGTGGTGTTTTCGGATCTTACAACTATGACGAATTGATGGGGTCCTTAGAAGGAAATGAAGGTTTTGGTCGAGCAGATTATTTCCTTGTGGGCAAGGACTTCCCCAGCTACATAGAATGCCAAGAGAAGGTTGATGAAGCATACCGGAACCAAACTAAATGGACAAGAATGTCGATATTGAACACAGCAGGCTCATACAAGTTTAGCAGTGACCGCACGATTCATGAATATGCCCGAGAGATATGGAACATTGAACCAGTTCAATTGCCGTAG

Predicted protein sequences of Glyma13g06040

Limit To All Plant Sequences

>Glyma13g06040.1   sequence type=predicted peptide   gene model=Glyma13g06040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSATMRFSATSTGAEAALPRRNSVAGFIGVAARSSAKSRLRFIGRNANLSLRRRMSSFPVVKCVSGSEAKAQDPVAKQQEATTSLSSFSPDASSIASSIKYHAEFTPLFSPENFDLPQAFLATAQSVRDALIINWNATYDYYEKLNVKQAYYLSMEFLQGRALLNAIGNLELTGPHAEALSKLGHKLENVAYQEPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQRITKDGQEEVADDWLEMGNPWEIIRNDVSYPVKFYGKVVSGSDGKKHWIGGEDIKAVAHDVPIPGYKTKTTINLRLWSTKAASEEFDLSAFNAGRHTEASEALANAEKICYILYPGDESIEGKILRLKQQYTLCSASLQDIIARFERRSGTNVNWEEFPEKVAVQMNDTHPTLCIPELMRILIDVKGLSWKDAWNITQRTVAYTNHTVLPEALEKWSLDLMQKLLPRHIEIIEMIDEELIRTIIAEYGTENSDLLEKKLKEMRILENVELPAEFADIVVKSKEAIDIPSEELQSSEQAEVEERKDDEVEAVAKKNGTDESSIEDEKEELPEPVPEPPKLVRMANLCVVGGHAVNGVAEIHSEIVKDEVFNAFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSKIITEWIGTEDWVLNTGKLAELRKFVDNEDLQVQWREAKRSNKVKVAAFIREKTGYSVSPDAMFDIQVKRIHEYKRQLLNIFGIVYRYKKMKEMSAAERKANFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVVFVPDYNVSVAEMLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIREEVGADNFFLFGAKAHEIAGLRKERAEGKFVPDPRFEEVKEFVRSGVFGSYNYDELMGSLEGNEGFGRADYFLVGKDFPSYIECQEKVDEAYRNQTKWTRMSILNTAGSYKFSSDRTIHEYAREIWNIEPVQLP*

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