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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G38130 | AT | Annotation by Michelle Graham. TAIR10: histone deacetylase 1 | chr4:17896493-17899057 REVERSE LENGTH=501 | SoyBase | E_val: 0 | ISS |
| GO:0009294 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA mediated transformation | SoyBase | N/A | ISS |
| GO:0009405 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pathogenesis | SoyBase | N/A | ISS |
| GO:0009861 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid and ethylene-dependent systemic resistance | SoyBase | N/A | ISS |
| GO:0016573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone acetylation | SoyBase | N/A | ISS |
| GO:0016575 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone deacetylation | SoyBase | N/A | ISS |
| GO:0045892 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:2000026 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of multicellular organismal development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004407 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: histone deacetylase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG1342 | KOG | Histone deacetylase complex, catalytic component RPD3 | JGI | ISS | |
| PTHR10625 | Panther | HISTONE DEACETYLASE | JGI | ISS | |
| PTHR10625:SF28 | Panther | HISTONE DEACETYLASE 1, 2 ,3 | JGI | ISS | |
| PF00850 | PFAM | Histone deacetylase domain | JGI | ISS | |
| UniRef100_I1LWR2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Histone deacetylase n=1 Tax=Glycine max RepID=I1LWR2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LWR2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Histone deacetylase n=1 Tax=Glycine max RepID=I1LWR2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g06010 not represented in the dataset |
Glyma13g06010 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g000200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g06010.4 sequence type=transcript gene model=Glyma13g06010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTTTAATCCAATTAGAGTTCATAACTTTGTTTTCATGTGTACCAAACATCCTTACACTTTCCTTTTTATCCTTAGTATAAGAGAGACTACTAGTTTAGGACGAAATTTATGGTTTACTTCGGAGAATAATTTTAAAATATCATCGAACAAGCAGTTAGAGTTGTGAGGCGCTTTTAGCCGGAGTTGCTTCTCTCATCGTCAGTTGTCGTTACGTTGGTCGACCGACTGTGTGCAGCTGATTTTGCAAAGAGAAGAGGGAATTTTGTTAGGATAGTTGAATACTGATAAGAGAAATAACGGGAAACAACAGACATGGATACTGGTGGCAATTCTTTACCATCTGCACCTGATGGGGTGAAGAGAAAGGTGTGCTATTTTTATGATCCGGAGGTTGGGAATTACTATTATGGGCAAGGTCACCCAATGAAGCCACATCGCATACGGATGACACATGCTCTTCTAGCCCATTATGGATTGCTACAACACATGCAGGTCCATAAGCCATTTCCTGCTAGAGACAGGGACCTTTGTCGATTTCATGCTGATGATTATGTTGCATTCCTTCGAAGCATAACTCCTGAAACACAGCAGGATCATCTGAGGCAACTCAAACGCTTTAATGTTGGTGAAGATTGTCCTGTTTTTGATGGCCTCTACTCTTTCTGTCAAACATATGCAGGGGGTTCAGTTGGGGGTGCTGTAAAGTTAAATCATGACCAATGTGATATTGCTGTCAACTGGGCTGGTGGGTTGCATCATGCCAAGAAGTGTGAGGCTTCTGGATTTTGCTATGTTAATGATATAGTCCTTGCAATCTTAGAACTTCTCAAACAACATGAGCGTGTTCTATATGTGGACATTGACATCCACCATGGAGACGGTGTGGAGGAAGCTTTCTACACTACTGACAGAGTCATGACTGTTTCTTTCCATAAATTTGGTGACTATTTTCCTGGTACTGGGGATGTACGTGATATTGGATATGGAAAAGGAAAATATTACTCTCTTAATGTTCCACTTGATGATGGCATTGATGATGAGAGTTATCATTTTTTGTTCAAACCAATAATTGGCAAAGTAATGGAAGTGTTCAGGCCTGGTGCAGTAGTTCTCCAGTGCGGTGCTGATTCTTTATCTGGAGACCGATTGGGATGTTTCAATCTTTCAATTAGGGGTCATGCTGAGTGTGTCAAATACATGAGATCATTCAATGTGCCCCTCTTGCTACTAGGTGGTGGTGGCTACACCATTCGGAATGTTGCTCGTTGTTGGTGCTATGAGACAGGAGTTGCTCTTGGAATAGAAGTTGATGACAAAATGCCACAACACGAGTATTATGAATATTTTGGTCCAGATTATACCCTTCATGTTGCCCCAAGTAACATGGAAAACAAGAATTCCCGTCATTTACTTGAAGAAATTCGATCTAAACTACTTGAGAATCTTTCCAAGCTGCAGCATGCTCCTAGTGTCCAATTTCAGGAAAGACCTCCTGATTCTGATCTTGGAGAGGCCGATGAAGATCATGATGATGGAGATGAGCCTTGGGATCCAGATTCTGACATGGACGTTGACGTTGAACGTGAGCTTGTCTCGAGCAAAGTAAAGAAAGAAATTGCTGAACCTCAGCCCAATGATCTGGAGGACCAGAGAAGTGGAGAGCATTTGAGAGACTCTGATACTGCAGTTGCGGAAACCTGCATGAAGGCTCTAGATATTTCTTCTCAGAAAGCTGATGAAGATAATGTGAAAGTAGAACAGAATACTGTGAATGATTTGGCCAAAGAGACGGACCTGAAGGGTTAAGCAACATAGGCTTTAACTGATTGGTGAACAGTTAAATTGATTTTCCATTTATGCTGTCGCATTTCCAAATTAATTGAGATGTGGCTGCTGCTTGGTTCCATCATAGTCCATTGTATACACCAGTCGCATTTTCCTAATGTTAGGGGCAAGTTTGCAAATTTAAATTGGTTTTTTTTTTATCTCATCCAGATGGTTTTTTGTACTGTTACATTACATCTTGTTACAGAATAGTATTACGTGCTATTATTGAGCCGGGTTTATTTTTCTTATACTGATCTATATTTATCACTTATCAGTGTATAAAGAGAACGACTAACAAATTAAAT
>Glyma13g06010.3 sequence type=CDS gene model=Glyma13g06010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATACTGGTGGCAATTCTTTACCATCTGCACCTGATGGGGTGAAGAGAAAGGTGTGCTATTTTTATGATCCGGAGGTTGGGAATTACTATTATGGGCAAGGTCACCCAATGAAGCCACATCGCATACGGATGACACATGCTCTTCTAGCCCATTATGGATTGCTACAACACATGCAGGTCCATAAGCCATTTCCTGCTAGAGACAGGGACCTTTGTCGATTTCATGCTGATGATTATGTTGCATTCCTTCGAAGCATAACTCCTGAAACACAGCAGGATCATCTGAGGCAACTCAAACGCTTTAATGTTGGTGAAGATTGTCCTGTTTTTGATGGCCTCTACTCTTTCTGTCAAACATATGCAGGGGGTTCAGTTGGGGGTGCTGTAAAGTTAAATCATGACCAATGTGATATTGCTGTCAACTGGGCTGGTGGGTTGCATCATGCCAAGAAGTGTGAGGCTTCTGGATTTTGCTATGTTAATGATATAGTCCTTGCAATCTTAGAACTTCTCAAACAACATGAGCGTGTTCTATATGTGGACATTGACATCCACCATGGAGACGGTGTGGAGGAAGCTTTCTACACTACTGACAGAGTCATGACTGTTTCTTTCCATAAATTTGGTGACTATTTTCCTGGTACTGGGGATGTACGTGATATTGGATATGGAAAAGGAAAATATTACTCTCTTAATGTTCCACTTGATGATGGCATTGATGATGAGAGTTATCATTTTTTGTTCAAACCAATAATTGGCAAAGTAATGGAAGTGTTCAGGCCTGGTGCAGTAGTTCTCCAGTGCGGTGCTGATTCTTTATCTGGAGACCGATTGGGATGTTTCAATCTTTCAATTAGGGGTCATGCTGAGTGTGTCAAATACATGAGATCATTCAATGTGCCCCTCTTGCTACTAGGTGGTGGTGGCTACACCATTCGGAATGTTGCTCGTTGTTGGTGCTATGAGACAGGAGTTGCTCTTGGAATAGAAGTTGATGACAAAATGCCACAACACGAGTATTATGAATATTTTGGTCCAGATTATACCCTTCATGTTGCCCCAAGTAACATGGAAAACAAGAATTCCCGTCATTTACTTGAAGAAATTCGATCTAAACTACTTGAGAATCTTTCCAAGCTGCAGCATGCTCCTAGTGTCCAATTTCAGGAAAGACCTCCTGATTCTGATCTTGGAGAGGCCGATGAAGATCATGATGATGGAGATGAGCCTTGGGATCCAGATTCTGACATGGACGTTGACGTTGAACGTGAGCTTGTCTCGAGCAAAGTAAAGAAAGAAATTGCTGAACCTCAGCCCAATGATCTGGAGGACCAGAGAAGTGGAGAGCATTTGAGAGACTCTGATACTGCAGTTGCGGAAACCTGCATGAAGGCTCTAGATATTTCTTCTCAGAAAGCTGATGAAGATAATGTGAAAGTAGAACAGAATACTGTGAATGATTTGGCCAAAGAGACGGACCTGAAGGGTTAA >Glyma13g06010.4 sequence type=CDS gene model=Glyma13g06010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATACTGGTGGCAATTCTTTACCATCTGCACCTGATGGGGTGAAGAGAAAGGTGTGCTATTTTTATGATCCGGAGGTTGGGAATTACTATTATGGGCAAGGTCACCCAATGAAGCCACATCGCATACGGATGACACATGCTCTTCTAGCCCATTATGGATTGCTACAACACATGCAGGTCCATAAGCCATTTCCTGCTAGAGACAGGGACCTTTGTCGATTTCATGCTGATGATTATGTTGCATTCCTTCGAAGCATAACTCCTGAAACACAGCAGGATCATCTGAGGCAACTCAAACGCTTTAATGTTGGTGAAGATTGTCCTGTTTTTGATGGCCTCTACTCTTTCTGTCAAACATATGCAGGGGGTTCAGTTGGGGGTGCTGTAAAGTTAAATCATGACCAATGTGATATTGCTGTCAACTGGGCTGGTGGGTTGCATCATGCCAAGAAGTGTGAGGCTTCTGGATTTTGCTATGTTAATGATATAGTCCTTGCAATCTTAGAACTTCTCAAACAACATGAGCGTGTTCTATATGTGGACATTGACATCCACCATGGAGACGGTGTGGAGGAAGCTTTCTACACTACTGACAGAGTCATGACTGTTTCTTTCCATAAATTTGGTGACTATTTTCCTGGTACTGGGGATGTACGTGATATTGGATATGGAAAAGGAAAATATTACTCTCTTAATGTTCCACTTGATGATGGCATTGATGATGAGAGTTATCATTTTTTGTTCAAACCAATAATTGGCAAAGTAATGGAAGTGTTCAGGCCTGGTGCAGTAGTTCTCCAGTGCGGTGCTGATTCTTTATCTGGAGACCGATTGGGATGTTTCAATCTTTCAATTAGGGGTCATGCTGAGTGTGTCAAATACATGAGATCATTCAATGTGCCCCTCTTGCTACTAGGTGGTGGTGGCTACACCATTCGGAATGTTGCTCGTTGTTGGTGCTATGAGACAGGAGTTGCTCTTGGAATAGAAGTTGATGACAAAATGCCACAACACGAGTATTATGAATATTTTGGTCCAGATTATACCCTTCATGTTGCCCCAAGTAACATGGAAAACAAGAATTCCCGTCATTTACTTGAAGAAATTCGATCTAAACTACTTGAGAATCTTTCCAAGCTGCAGCATGCTCCTAGTGTCCAATTTCAGGAAAGACCTCCTGATTCTGATCTTGGAGAGGCCGATGAAGATCATGATGATGGAGATGAGCCTTGGGATCCAGATTCTGACATGGACGTTGACGTTGAACGTGAGCTTGTCTCGAGCAAAGTAAAGAAAGAAATTGCTGAACCTCAGCCCAATGATCTGGAGGACCAGAGAAGTGGAGAGCATTTGAGAGACTCTGATACTGCAGTTGCGGAAACCTGCATGAAGGCTCTAGATATTTCTTCTCAGAAAGCTGATGAAGATAATGTGAAAGTAGAACAGAATACTGTGAATGATTTGGCCAAAGAGACGGACCTGAAGGGTTAA
>Glyma13g06010.3 sequence type=predicted peptide gene model=Glyma13g06010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDTGGNSLPSAPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVHKPFPARDRDLCRFHADDYVAFLRSITPETQQDHLRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHDQCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDVRDIGYGKGKYYSLNVPLDDGIDDESYHFLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVKYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRHLLEEIRSKLLENLSKLQHAPSVQFQERPPDSDLGEADEDHDDGDEPWDPDSDMDVDVERELVSSKVKKEIAEPQPNDLEDQRSGEHLRDSDTAVAETCMKALDISSQKADEDNVKVEQNTVNDLAKETDLKG* >Glyma13g06010.4 sequence type=predicted peptide gene model=Glyma13g06010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDTGGNSLPSAPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVHKPFPARDRDLCRFHADDYVAFLRSITPETQQDHLRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHDQCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDVRDIGYGKGKYYSLNVPLDDGIDDESYHFLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVKYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRHLLEEIRSKLLENLSKLQHAPSVQFQERPPDSDLGEADEDHDDGDEPWDPDSDMDVDVERELVSSKVKKEIAEPQPNDLEDQRSGEHLRDSDTAVAETCMKALDISSQKADEDNVKVEQNTVNDLAKETDLKG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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