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Report for Sequence Feature Glyma13g05961

Feature Type:gene_model
Chromosome:Gm13
Start:6266101
stop:6267774
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g05961
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G22370AT Annotation by Michelle Graham. TAIR10: UDP-glucosyl transferase 85A5 | chr1:7898116-7899879 REVERSE LENGTH=479 SoyBaseE_val: 2.00E-89ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0015020GO-mf Annotation by Michelle Graham. GO Molecular Function: glucuronosyltransferase activity SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
GO:0016758GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups SoyBaseN/AISS
KOG1192 KOG UDP-glucuronosyl and UDP-glucosyl transferase JGI ISS
PTHR11926Panther GLUCOSYL/GLUCURONOSYL TRANSFERASES JGI ISS
PTHR11926:SF15Panther UDP-GLUCURONOSYLTRANSFERASE RELATED JGI ISS
UniRef100_G7KLV5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cytokinin-O-glucosyltransferase n=1 Tax=Medicago truncatula RepID=G7KLV5_MEDTR SoyBaseE_val: 4.00E-149ISS
UniRef100_UPI000233C0C1UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C0C1 related cluster n=1 Tax=unknown RepID=UPI000233C0C1 SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g05961
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g05961 not represented in the dataset
Glyma13g05961 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g05961
ParalogEvidenceComments
Glyma19g03451 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g05961 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g058000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g05961
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g05961
>Glyma13g05961.1   sequence type=CDS   gene model=Glyma13g05961   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTACTCAGCAACAAGAAAGCCCTATGTTGTGTTGACTCCATTTCCATTTCCATTTCCATTTCAAGGTCACATCAACCCATTGTTCCAACTAGCCAAGTTGCTTCACCTCAGAGGCTTTCCATACAACCATTATGGACATGGTGATGCTGATGTTGCTCGAGACATAATCTCTCTTTGTGAAACAATAAGAGAACACTTGCTCCTCCCCTTTTGTGATCTTCTTGCTAGACTTAAAGATTCTGCCACTAAGAGTCTTGTTCCCCCAGTTACCTGCTTGGTTTCTGATTGTGCCATGACTTTTACTATACAAGCTGCTGAAGAACTTTCACTCCCTATTGTTCTAATTCAACCGGCCAGTGCATGTTCGTTATTGTCTGGTTTGCATTTTCGTTCTCTTTTTTATAAAGGTCTCGTACAACTCAAAGATGAGAGTTGTGTGGACTGGATTCCAGGCTTGAAGAACTTTAGACTGAAGGACCTGCCTGACTTTATAAGGACAACACAGATCAAAATAACTATGGTAGAATGTTTCATTGAATCAGCAAATAATGTGCACAGAGCTTCTGCTGTTATTATTAATACTTCTGATGAACTTGAAAGTGATGTGTTGAATGCTCATACCTCTATGGTCCCCTCTCTTTACCCTATTGGTCCTTTCCCTTCATTTTTAAATCAAAGTCCACAGAAGAACCACTTGGCATCTCTAGGTTCCAATCTTTGGAAGGAAGATACCGAGTTTGCTTGGGGTTTGGCCAACAGCAAGAGACCCTTTCTGTGGATCATTAGGCCTGACCTTGTCATTGGTGGCTCAGTGATTTTGTCGTCTGAGTCTGTCAATGAAACTTCAGATAGAGGCCTAACAGCTAGCTATATTTGTGCAGGCGTGCCAATGTTGTGTTGGCCTTTTTATGTTGATCAACCAACAAACTGTGGATCTGTATGCAATGAATGGGACATTGGGATTGAAATTGATACCAATGAATTGATGGTGGGAGAGAAAGGAAAGAAAATGAGGCAAAAGGTTATGGAGTTGAAGAAGAGGGCAGAGGAGGACGTTCATACATGA
Predicted protein sequences of Glyma13g05961
>Glyma13g05961.1   sequence type=predicted peptide   gene model=Glyma13g05961   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSYSATRKPYVVLTPFPFPFPFQGHINPLFQLAKLLHLRGFPYNHYGHGDADVARDIISLCETIREHLLLPFCDLLARLKDSATKSLVPPVTCLVSDCAMTFTIQAAEELSLPIVLIQPASACSLLSGLHFRSLFYKGLVQLKDESCVDWIPGLKNFRLKDLPDFIRTTQIKITMVECFIESANNVHRASAVIINTSDELESDVLNAHTSMVPSLYPIGPFPSFLNQSPQKNHLASLGSNLWKEDTEFAWGLANSKRPFLWIIRPDLVIGGSVILSSESVNETSDRGLTASYICAGVPMLCWPFYVDQPTNCGSVCNEWDIGIEIDTNELMVGEKGKKMRQKVMELKKRAEEDVHT*






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