Glyma13g05920 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g05920

Feature Type:	gene_model
Chromosome:	Gm13
Start:	6224967
stop:	6233754
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g05920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15450	AT	Annotation by Michelle Graham. TAIR10: casein lytic proteinase B3 \| chr5:5014399-5018255 REVERSE LENGTH=968	SoyBase	E_val: 0	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0016485	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein processing	SoyBase	N/A	ISS
GO:0019538	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009532	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid stroma	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG1051	KOG	Chaperone HSP104 and related ATP-dependent Clp proteases	JGI		ISS
PTHR11638	Panther	ATP-DEPENDENT CLP PROTEASE	JGI		ISS
PTHR11638:SF18	Panther	CLPC	JGI		ISS
PF00004	PFAM	ATPase family associated with various cellular activities (AAA)	JGI		ISS
PF02861	PFAM	Clp amino terminal domain	JGI		ISS
PF07724	PFAM	AAA domain (Cdc48 subfamily)	JGI		ISS
PF10431	PFAM	C-terminal, D2-small domain, of ClpB protein	JGI		ISS
UniRef100_G7KLS1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chaperone protein clpB n=1 Tax=Medicago truncatula RepID=G7KLS1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0001D62D2F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001D62D2F related cluster n=1 Tax=unknown RepID=UPI0001D62D2F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g05920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g05920

Paralog	Evidence	Comments
Glyma19g03440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g05920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g058600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g05920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g05920

Limit To All Plant Sequences

>Glyma13g05920.1   sequence type=CDS   gene model=Glyma13g05920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCGGCGACGTCGTTTTTGGGCCTCGGTCTTCGCCCCTCCGTCCCAATTTGCGCCAACAGAAACAACGGCATTCGATTCTCTCAGTTTCAAGTCTCCTTTGGCTTTCGTGAGAACTCCACTTCCCTCAAGACTTTGAATTCAACACCGTTGAAGAAAAGAGAAGCTTTCTCAAATGGGTCTTCGAGAACGCGAAGAAACCCGTTGTTCTCTGTTCGCTGCACAGTTTCATCAAGTGGAAAGATTACACAACAGGAATTCACGGAAATGGCATGGCAAGCAATTATCTCGGCACCAGAAGTGGCTAAGGAGAACAAGCATCAGATTGTGGAGACTGAGCACTTGATGAAAGCATTGTTGGAGCAAAAGAATGGACTTGCTCGCCGGATCTTTTCTAAGGTTGGGGTAGATAATACTCGGCTTCTAGAGGCCACTGATAAGCACATTCAGCGGCAACCCAAGGTTGTAGGGGAATCTGCTGGTTCAATGCTAGGGCGTGATTTGGAGGCATTGATTCAGAGAGCCAGGGACTTCAAGAAAGAATATGGGGACTCATTTGTGTCGGTTGAGCACTTTGTTCTTGGTTTTGCCCAAGATAAACGATTTGGGAAGATATTGTTTAGAGATTTTCAAATATCTCAGCAAGCTCTAAAATCTGCCATAGAATCCATAAGGGGACGCCAGTCAGTTATTGACCAAGATCCTGAAGGAAAGTATGAAGCCTTGGAAAAGTATGGGAAAGATTTGACGGCAATGGCTAAAGCAGGAAAACTTGACCCAGTCATAGGAAGAGATGATGAAATACGCAGGTGCATTCAGATTCTCTCCAGGAGGACAAAGAACAATCCTGTTCTAATTGGGGAGCCTGGTGTTGGAAAGACTGCAATCTCTGAAGGACTTGCTCAAAGAATTGTTCAAGGAGATGTTCCTCAAGCTTTGATGAATCGAAGGCTTATATCCCTTGATATGGGTGCACTTATTGCTGGAGCAAAGTACCGGGGAGAATTTGAGGATAGACTGAAAGCTGTTCTGAAAGAAGTAACAGAATCTGATGGTCAGACTATCCTTTTCATTGATGAAATCCATACAGTTGTTGGGGCAGGTGCTTCAAATGGTGCTATGGATGCTGGTAATCTCTTAAAACCTATGCTTGGTCGGGGGGAGCTGCGATGTATTGGTGCAACAACATTAGATGAGTATCGAAAGTATATTGAGAAGGACCCTGCACTTGAGCGTCGTTTCCAGCAAGTTTATGTTGACCAACCTTCAGTTGAGGATACCATTTCAATACTAAGGGGACTGCGGGAAAGATATGAGCTGCATCATGGAGTTCGCATTTCTGACAGTGCTCTTGTGGATGCTGCAATTCTCTCAGATCGATACATAAGTGGGAGGTTTTTGCCTGATAAAGCTATTGATCTGGTTGATGAAGCAGCTGCTAAACTAAAAATGGAAATTACTTCAAAACCCACTGCACTTGATGAGATTAATCGGTCAGTCTTGAAACTCGAGATGGAGAGACTCTCTCTGATGAATGATACAGACAAGGCTTCTAAAGATAGATTAAATCGTCTTGAGACCGAACTCTCTCTCTTAAAAGAGAAACAGGACGAATTGACTGGACAGTGGGAGCATGAAAAGTCTGTAATGACTAATCTGCAATCGATTAAAGAGGAGATAGACAGGGTAAATCTTGAGATTCAACAGGCTGAGCGAGAGTATGATCTTAATCGCGCTGCTGAATTGAAGTATGGTAGTCTAAACTCCTTGCAACGCCAACTTGAAAGTGCAGAGAAAGAATTGCATGAATATATGAACTCTGGTAAGTCTATGTTAAGAGAGGAAGTTACTGGAAATGACATTGCTGATATTGTAAGCAAGTGGACTGGTATCCCCATTTCAAAACTTCAACAATCAGATAGAGAGAAGTTGTTGTATCTAGAGGAAGAGCTCCACAAGCGTGTTGTCGGTCAAGATCCTGCTGTCAAGGCAGTAGCTGAGGCTATCCAACGTTCAAGAGCAGGTCTTTCAGATCCCCATCGCCCAATCGCTAGCTTCATGTTTATGGGACCAACGGGTGTAGGAAAGACCGAGCTAGCCAAGGCCCTTGCTTCATATTTGTTCAACACAGAAGAAGCACTTGTACGAATTGATATGAGTGAGTACATGGAAAAGCATACGGTTTCAAGATTGATTGGGGCTCCACCTGGATATGTTGGGTATGAAGAGGGAGGGCAACTAACAGAGACAGTTCGTCGCCGACCATATGCTGTCATTTTGTTTGATGAGATTGAGAAGGCACACTCAGATGTTTTCAATGTATTCCTTCAAATCTTGGATGATGGAAGGGTAACTGATTCACAGGGCCGAACCGTAAGTTTTACCAACACAGTTATCATTATGACCTCAAATGTTGGATCACAGTACATTCTCAACACAGATGATGACACTGTGCCCAAAGAGTCTGCATATGAAACTATAAAGCAGCGGGTAATGGACGCTGCAAGATCCATCTTTCGCCCTGAGTTCATGAATAGAGTTGATGAATATATTGTTTTCCAGCCTCTAGACCGCAACCAAATAAGTAGTATTGTCAGGTTACAGTTGGAGCGTGTGCAGAAGAGAATTGCAGATCGTAAGATGAAAATCCAAGTTACAGAAGCTGCAATCCAACTTCTTGGTAGTTTGGGGTATGATCCAAACTACGGTGCTAGGCCAGTCAAGCGAGTTATTCAGCAAAACGTGGAGAATGAACTTGCTAAGGGTATTCTTAGAGGAGAGTTCAAGGAAGAAGACACAATTTTAGTAGACACAGAAGTCACGGTATTTGCCAATGGTCAACTTCCCCAACAAAAGCTAGTTTTTAGGAGGGTTGAAGCTGATTCCAATTCTACTGTTGAAGACAGAAGGGAAGGCTTTCCACAGATTCTGTGA

Predicted protein sequences of Glyma13g05920

Limit To All Plant Sequences

>Glyma13g05920.1   sequence type=predicted peptide   gene model=Glyma13g05920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASATSFLGLGLRPSVPICANRNNGIRFSQFQVSFGFRENSTSLKTLNSTPLKKREAFSNGSSRTRRNPLFSVRCTVSSSGKITQQEFTEMAWQAIISAPEVAKENKHQIVETEHLMKALLEQKNGLARRIFSKVGVDNTRLLEATDKHIQRQPKVVGESAGSMLGRDLEALIQRARDFKKEYGDSFVSVEHFVLGFAQDKRFGKILFRDFQISQQALKSAIESIRGRQSVIDQDPEGKYEALEKYGKDLTAMAKAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRRLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESDGQTILFIDEIHTVVGAGASNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPSVEDTISILRGLRERYELHHGVRISDSALVDAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLMNDTDKASKDRLNRLETELSLLKEKQDELTGQWEHEKSVMTNLQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNSLQRQLESAEKELHEYMNSGKSMLREEVTGNDIADIVSKWTGIPISKLQQSDREKLLYLEEELHKRVVGQDPAVKAVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYLFNTEEALVRIDMSEYMEKHTVSRLIGAPPGYVGYEEGGQLTETVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNTDDDTVPKESAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRNQISSIVRLQLERVQKRIADRKMKIQVTEAAIQLLGSLGYDPNYGARPVKRVIQQNVENELAKGILRGEFKEEDTILVDTEVTVFANGQLPQQKLVFRRVEADSNSTVEDRREGFPQIL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain