Glyma13g05890 - SoyBase

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Report for Sequence Feature Glyma13g05890

Feature Type:	gene_model
Chromosome:	Gm13
Start:	6199393
stop:	6203098
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g05890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39380	AT	Annotation by Michelle Graham. TAIR10: Plant calmodulin-binding protein-related \| chr5:15759163-15760686 REVERSE LENGTH=507	SoyBase	E_val: 8.00E-41	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PF07839	PFAM	Plant calmodulin-binding domain	JGI		ISS
UniRef100_Q9FLZ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin-binding protein-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9FLZ6_ARATH	SoyBase	E_val: 4.00E-38	ISS
UniRef100_UPI000233C0C0	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C0C0 related cluster n=1 Tax=unknown RepID=UPI000233C0C0	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g05890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g05890

Paralog	Evidence	Comments
Glyma19g03401	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g05890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g058900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g05890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g05890

Limit To All Plant Sequences

>Glyma13g05890.1   sequence type=CDS   gene model=Glyma13g05890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAATGAAAGTGGTGAATTACCAGTGACCCCAGAAGTTACTGAGTCACCTGGGGTTGAAATAAGAGGACATTCAGATGGCAAGGCTAGTTCTGGAACTAGTGTTGAAAAAGTTGTTCCCAATTATCTCAGAGCTTCCACTGGTTCTTGTCATGATTTTTGTAAATACGGGAGGAAACATGCATTTGATTCGAAAGAAAGATGTTCTATACCTAATAGAGCTACAAGAAAACAGCTTCACCACAGTTCAGAAGGTAGTGTTGGTGGGACAATGATGTCATTTGCTAGGCTCAGTGCATCTGTGGATTCTACTAAGCCGACAAAGATGTCAACGGTCAAACTCAAACAATCAGTTGATTCCAAGACCTGGATTTCTGATACCTCTGAAACTTACAAGCGGGAACTGCCAACAAAATCATTTGACAGCCAAAAAGAAACAGGGAATGAAGTTCTGGTGAATAGGAACAAATCATCATTGGCCAAGGTCAAACCATCACTCCTTCCAAAGTCCCATACATCTCCATCAGCGAGACAAGAAATTTCATCAATTAAGGAGGTCCGATCCCCATCAAATTCAACTTCCATAAAGGTGGGAACTCCATCAAAATCAACTTCCAGGAAGGTGGAAGCTCCACCAAAATCAACCGCCAATAAAATGGAAGCTCCATTAAAATCAACTTCCAATAAAGTGGGAAATCCATCAAAATCAACCTCCAAGGTCAAAGCTTCATCAAAACGAACTACCAATATGGTGAAAACCTCATCACAGTTATCTTCTCTCAAAGGTAAAGAAATGAAGTTGTCTGAAAAACATGTAAATTCTTTAAATTCAAGCAGTGTCAGAAGGAAGCAAATATCTTCTATGAATTCCTCGGAAGGTGTTGGTGGCCAAAGATATAGTAAGATCAAGACAGAAAAGGAGGTGACCTCCTCCAATTCCAAAGCAGCTTCAAAAAAACTGATGGCACCTTCAAAGGCTTTATTAACCCCCAGACCTTCCCTTATTAGAGTTGCAAGTATAAATTCAAGAAAGCATAAGAGCCTGAAAATTGCTTCTCATCTTAAGAATCAGCGGAGTGCCCGAAAGGTTGAACATGAGGAACACAACAACAACGAGGTAGAGGAAAAGACTTTGTACGTCATCAAGATGGGAAGTGAAAACAAAACTTCGCTATCTGATCAAAATGCAAGCTATGATGATGAATCATACCTTCCTCAGTTGTCATCACCAAAGTCTTCAGTATCCTCAATTTCTAAATCCTTATCCCAAGAAGACCAAGAGGAATCTGAATATACAACTAGTGAATTTGAGCAGGATTCTTTTTCAGGAAACCATGAAACTGAATGCATTGAAAATGAGGAGACATTGGCTGCTGAGAAGAAAGGCAAGCCCAAAAAGGGTGGGGTTGTATATTCCAAAGACAATGACAACCAAATGATAAAATTAAAGTTCAGAAGGGGAAAAGTGGTTGAAAATCAAACTGAGATAAGTAGTCCAAGGAGGCTTAAATTTCGGAGAGCAAGAGTGCCGAGGGAGAAAGCCAATGTTAACAGCAATGTCCGTAAAAGCTTTGAAAGAAATGTAGCCTGTGATAACAGCAATGATGCTACAACTGGTCCAGAGAAGGTTGTTTTGAGGCATCAAGACATGCAGGAAAAAAAAGATGCACAGGGATTATTAAATAATGTAATTGAGGAAACAGCAAGTAAACTGGTTGAAGCTCGCAAGAGCAAGGTTAAAGCATTGGTTGGTGCCTTTGAAACCGTGATCTCTCTTCATGAGAAAAAACCTTCTGCAGACACAGTCAGTTGA

Predicted protein sequences of Glyma13g05890

Limit To All Plant Sequences

>Glyma13g05890.1   sequence type=predicted peptide   gene model=Glyma13g05890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANESGELPVTPEVTESPGVEIRGHSDGKASSGTSVEKVVPNYLRASTGSCHDFCKYGRKHAFDSKERCSIPNRATRKQLHHSSEGSVGGTMMSFARLSASVDSTKPTKMSTVKLKQSVDSKTWISDTSETYKRELPTKSFDSQKETGNEVLVNRNKSSLAKVKPSLLPKSHTSPSARQEISSIKEVRSPSNSTSIKVGTPSKSTSRKVEAPPKSTANKMEAPLKSTSNKVGNPSKSTSKVKASSKRTTNMVKTSSQLSSLKGKEMKLSEKHVNSLNSSSVRRKQISSMNSSEGVGGQRYSKIKTEKEVTSSNSKAASKKLMAPSKALLTPRPSLIRVASINSRKHKSLKIASHLKNQRSARKVEHEEHNNNEVEEKTLYVIKMGSENKTSLSDQNASYDDESYLPQLSSPKSSVSSISKSLSQEDQEESEYTTSEFEQDSFSGNHETECIENEETLAAEKKGKPKKGGVVYSKDNDNQMIKLKFRRGKVVENQTEISSPRRLKFRRARVPREKANVNSNVRKSFERNVACDNSNDATTGPEKVVLRHQDMQEKKDAQGLLNNVIEETASKLVEARKSKVKALVGAFETVISLHEKKPSADTVS*

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