Glyma13g05870 - SoyBase

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Report for Sequence Feature Glyma13g05870

Feature Type:	gene_model
Chromosome:	Gm13
Start:	6175752
stop:	6179591
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g05870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G29270	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr3:11235326-11236117 FORWARD LENGTH=263	SoyBase	E_val: 2.00E-115	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR13139	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR13139:SF14	Panther	RING FINGER PROTEIN FAMILY MEMBER (RNF-1)-RELATED	JGI		ISS
UniRef100_B7FKZ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CCP n=1 Tax=Medicago truncatula RepID=B7FKZ3_MEDTR	SoyBase	E_val: 1.00E-153	ISS
UniRef100_C6TIH4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TIH4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g05870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g05870

Paralog	Evidence	Comments
Glyma19g03380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g05870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g059100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g05870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g05870

Limit To All Plant Sequences

>Glyma13g05870.5   sequence type=transcript   gene model=Glyma13g05870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTAAAAAACACTTAATTAAAAATTGAATAAAAGTGTAGCATCCATCAAATAATTTAACCAAATATTTTTATCATCATGGCATGGGGTGGGCCACTTGAATAAACACGACGTCGTTTTCCTTGTGTGTTGGTTTCAGTCAAATTGAACGGAACCACCGTTTCTCTCTCTCTCACGCACACATGGTGCTGCCACTGTCACTCTTCTCTTCTCCTTTCTGCTTCGCCGATTCTCTATTTTTGCGCGCAATCGAGTAACTTGATTGCATGTGGTCCTAAACTTGCAGGATGGATTGTATGCTTTGGGCCAGTCGTTAATGATAACTTGAGGTCTGGATGATGCTTTCTGATTGGTTGTTTACATATTGTAATTCAGAATGTGGAACTTTGCATCGAATTGCATTGCTGGAACTGTGGGACTGAAAAATGATTCAAAGCCTACTCATTCTGCTTCGGAATGTTCTGATGATGAAAACTCTGTTATAGGCAGAGAGGAAGGGCTGGAATGCCCAATATGCTGGGAATCTTTCAATATTGTTGAAAATGTGCCCTATGTTTTATGGTGTGGCCACACCCTTTGTAAAAATTGTATCCTCGGACTGCAGTGGGCTGTTGTGAAATTTCCAACACTGCCTGTTCAACTTCCCCTTTTTATCTCCTGTCCATGGTGCAACCTTCTGTCTTTCCGTTTAGTTTACCGGGGAAACCTTAAATTCCCTCGCAAAAACTACTTTCTTCTTTGGATGGTTGAGAGCATGAATGGTGATAGAGGGAAATCGCATTCACCTTTCTGTGGTGATAATCAGCAACACTCAATTAAAGATAATTTAACCATGGGAAGCCAAGTAAGCCATGGAAACCTTCGGAGGGGGCTAGTTCGCCATCCAGAGACATCGAGTTCCAACCAATATCATGGTAATACTGGTAATCACCTCAATACAGAAAGATTTCATGTTTATCTTCGGAAGTCACTGATCTTCTTTGTCCAGTTGACGGCTAAGTTCCCATTGGTCATTATATTCCTTTTAATTGTCTTATATGCAATACCAGCAAGTGCAGCCATTTTGGCCCTGTATGTACTTGTTACAATTCTGTTTGCCCTCCCATCATTTCTCATTTTGTACTTCTCATATCCTAGTTTGGATTGGCTTGTGAGGGAAATTATCACTTAAGATTGTGAACTAGTGTAGGCTCCAACTTTGCAAACATTAAGACAACAGCTTATATCTTCTACTTTGTAATTATCCGACTTCTCCTTTAGAAGCTGTCATTTATCTTCCCATATAGGGTCGTTATCAATATATGTATACTTGAGTCTTGATTGTAGCTCAGGTCGAACTTGGCTAGTTGGTGGATGAAATGTCAGTTTTTGGCATTAGCTTCGATGTCAATCAGGGCAGTGGGATAGGGTAATGATAAATGCTTGTGCCCTTTCCTGGTGGCAAGAATTTGTTTGATTAATGCCATGTTTTATTTCAATTCTGATTATACTTATATTTGTAAATTGTATATAATAATTGAGTTGTTTGTTTGGCTGTGTGTGGAAATACTATCTGCTTAACTTGAAATAAGTGATATTCCGTTCTCTGTTTAAGAAATGTATGTTTTATGGTATGGCTGGCTGTGTAG

>Glyma13g05870.6   sequence type=transcript   gene model=Glyma13g05870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTAAAAAACACTTAATTAAAAATTGAATAAAAGTGTAGCATCCATCAAATAATTTAACCAAATATTTTTATCATCATGGCATGGGGTGGGCCACTTGAATAAACACGACGTCGTTTTCCTTGTGTGTTGGTTTCAGTCAAATTGAACGGAACCACCGTTTCTCTCTCTCTCACGCACACATGGTGCTGCCACTGTCACTCTTCTCTTCTCCTTTCTGCTTCGCCGATTCTCTATTTTTGCGCGCAATCGATTGTATGCTTTGGGCCAGTCGTTAATGATAACTTGAGGTCTGGATGATGCTTTCTGATTGGTTGTTTACATATTGTAATTCAGAATGTGGAACTTTGCATCGAATTGCATTGCTGGAACTGTGGGACTGAAAAATGATTCAAAGCCTACTCATTCTGCTTCGGAATGTTCTGATGATGAAAACTCTGTTATAGGCAGAGAGGAAGGGCTGGAATGCCCAATATGCTGGGAATCTTTCAATATTGTTGAAAATGTGCCCTATGTTTTATGGTGTGGCCACACCCTTTGTAAAAATTGTATCCTCGGACTGCAGTGGGCTGTTGTGAAATTTCCAACACTGCCTGTTCAACTTCCCCTTTTTATCTCCTGTCCATGGTGCAACCTTCTGTCTTTCCGTTTAGTTTACCGGGGAAACCTTAAATTCCCTCGCAAAAACTACTTTCTTCTTTGGATGGTTGAGAGCATGAATGGTGATAGAGGGAAATCGCATTCACCTTTCTGTGGTGATAATCAGCAACACTCAATTAAAGATAATTTAACCATGGGAAGCCAAGTAAGCCATGGAAACCTTCGGAGGGGGCTAGTTCGCCATCCAGAGACATCGAGTTCCAACCAATATCATGGTAATACTGGTAATCACCTCAATACAGAAAGATTTCATGTTTATCTTCGGAAGTCACTGATCTTCTTTGTCCAGTTGACGGCTAAGTTCCCATTGGTCATTATATTCCTTTTAATTGTCTTATATGCAATACCAGCAAGTGCAGCCATTTTGGCCCTGTATGTACTTGTTACAATTCTGTTTGCCCTCCCATCATTTCTCATTTTGTACTTCTCATATCCTAGTTTGGATTGGCTTGTGAGGGAAATTATCACTTAAGATTGTGAACTAGTGTAGGCTCCAACTTTGCAAACATTAAGACAACAGCTTATATCTTCTACTTTGTAATTATCCGACTTCTCCTTTAGAAGCTGTCATTTATCTTCCCATATAGGGTCGTTATCAATATATGTATACTTGAGTCTTGATTGTAGCTCAGGTCGAACTTGGCTAGTTGGTGGATGAAATGTCAGTTTTTGGCATTAGCTTCGATGTCAATCAGGGCAGTGGGATAGGGTAATGATAAATGCTTGTGCCCTTTCCTGGTGGCAAGAATTTGTTTGATTAATGCCATGTTTTATTTCAATTCTGATTATACTTATATTTGTAAATTGTATATAATAATTGAGTTGTTTGTTTGGCTGTGTGTGGAAATACTATCTGCTTAACTTGAAATAAGTGATATTCCGTTCTCTGTTTAAGAAATGTATGTTTTATGGTATGGCTGGCTGTGTAG

Coding sequences of Glyma13g05870

Limit To All Plant Sequences

>Glyma13g05870.4   sequence type=CDS   gene model=Glyma13g05870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGAACTTTGCATCGAATTGCATTGCTGGAACTGTGGGACTGAAAAATGATTCAAAGCCTACTCATTCTGCTTCGGAATGTTCTGATGATGAAAACTCTGTTATAGGCAGAGAGGAAGGGCTGGAATGCCCAATATGCTGGGAATCTTTCAATATTGTTGAAAATGTGCCCTATGTTTTATGGTGTGGCCACACCCTTTGTAAAAATTGTATCCTCGGACTGCAGTGGGCTGTTGTGAAATTTCCAACACTGCCTGTTCAACTTCCCCTTTTTATCTCCTGTCCATGGTGCAACCTTCTGTCTTTCCGTTTAGTTTACCGGGGAAACCTTAAATTCCCTCGCAAAAACTACTTTCTTCTTTGGATGGTTGAGAGCATGAATGGTGATAGAGGGAAATCGCATTCACCTTTCTGTGGTGATAATCAGCAACACTCAATTAAAGATAATTTAACCATGGGAAGCCAAGTAAGCCATGGAAACCTTCGGAGGGGGCTAGTTCGCCATCCAGAGACATCGAGTTCCAACCAATATCATGGTAATACTGGTAATCACCTCAATACAGAAAGATTTCATGTTTATCTTCGGAAGTCACTGATCTTCTTTGTCCAGTTGACGGCTAAGTTCCCATTGGTCATTATATTCCTTTTAATTGTCTTATATGCAATACCAGCAAGTGCAGCCATTTTGGCCCTGTATGTACTTGTTACAATTCTGTTTGCCCTCCCATCATTTCTCATTTTGTACTTCTCATATCCTAGTTTGGATTGGCTTGTGAGGGAAATTATCACTTAA

>Glyma13g05870.5   sequence type=CDS   gene model=Glyma13g05870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGAACTTTGCATCGAATTGCATTGCTGGAACTGTGGGACTGAAAAATGATTCAAAGCCTACTCATTCTGCTTCGGAATGTTCTGATGATGAAAACTCTGTTATAGGCAGAGAGGAAGGGCTGGAATGCCCAATATGCTGGGAATCTTTCAATATTGTTGAAAATGTGCCCTATGTTTTATGGTGTGGCCACACCCTTTGTAAAAATTGTATCCTCGGACTGCAGTGGGCTGTTGTGAAATTTCCAACACTGCCTGTTCAACTTCCCCTTTTTATCTCCTGTCCATGGTGCAACCTTCTGTCTTTCCGTTTAGTTTACCGGGGAAACCTTAAATTCCCTCGCAAAAACTACTTTCTTCTTTGGATGGTTGAGAGCATGAATGGTGATAGAGGGAAATCGCATTCACCTTTCTGTGGTGATAATCAGCAACACTCAATTAAAGATAATTTAACCATGGGAAGCCAAGTAAGCCATGGAAACCTTCGGAGGGGGCTAGTTCGCCATCCAGAGACATCGAGTTCCAACCAATATCATGGTAATACTGGTAATCACCTCAATACAGAAAGATTTCATGTTTATCTTCGGAAGTCACTGATCTTCTTTGTCCAGTTGACGGCTAAGTTCCCATTGGTCATTATATTCCTTTTAATTGTCTTATATGCAATACCAGCAAGTGCAGCCATTTTGGCCCTGTATGTACTTGTTACAATTCTGTTTGCCCTCCCATCATTTCTCATTTTGTACTTCTCATATCCTAGTTTGGATTGGCTTGTGAGGGAAATTATCACTTAA

>Glyma13g05870.6   sequence type=CDS   gene model=Glyma13g05870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGAACTTTGCATCGAATTGCATTGCTGGAACTGTGGGACTGAAAAATGATTCAAAGCCTACTCATTCTGCTTCGGAATGTTCTGATGATGAAAACTCTGTTATAGGCAGAGAGGAAGGGCTGGAATGCCCAATATGCTGGGAATCTTTCAATATTGTTGAAAATGTGCCCTATGTTTTATGGTGTGGCCACACCCTTTGTAAAAATTGTATCCTCGGACTGCAGTGGGCTGTTGTGAAATTTCCAACACTGCCTGTTCAACTTCCCCTTTTTATCTCCTGTCCATGGTGCAACCTTCTGTCTTTCCGTTTAGTTTACCGGGGAAACCTTAAATTCCCTCGCAAAAACTACTTTCTTCTTTGGATGGTTGAGAGCATGAATGGTGATAGAGGGAAATCGCATTCACCTTTCTGTGGTGATAATCAGCAACACTCAATTAAAGATAATTTAACCATGGGAAGCCAAGTAAGCCATGGAAACCTTCGGAGGGGGCTAGTTCGCCATCCAGAGACATCGAGTTCCAACCAATATCATGGTAATACTGGTAATCACCTCAATACAGAAAGATTTCATGTTTATCTTCGGAAGTCACTGATCTTCTTTGTCCAGTTGACGGCTAAGTTCCCATTGGTCATTATATTCCTTTTAATTGTCTTATATGCAATACCAGCAAGTGCAGCCATTTTGGCCCTGTATGTACTTGTTACAATTCTGTTTGCCCTCCCATCATTTCTCATTTTGTACTTCTCATATCCTAGTTTGGATTGGCTTGTGAGGGAAATTATCACTTAA

Predicted protein sequences of Glyma13g05870

Limit To All Plant Sequences

>Glyma13g05870.4   sequence type=predicted peptide   gene model=Glyma13g05870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWNFASNCIAGTVGLKNDSKPTHSASECSDDENSVIGREEGLECPICWESFNIVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYRGNLKFPRKNYFLLWMVESMNGDRGKSHSPFCGDNQQHSIKDNLTMGSQVSHGNLRRGLVRHPETSSSNQYHGNTGNHLNTERFHVYLRKSLIFFVQLTAKFPLVIIFLLIVLYAIPASAAILALYVLVTILFALPSFLILYFSYPSLDWLVREIIT*

>Glyma13g05870.5   sequence type=predicted peptide   gene model=Glyma13g05870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWNFASNCIAGTVGLKNDSKPTHSASECSDDENSVIGREEGLECPICWESFNIVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYRGNLKFPRKNYFLLWMVESMNGDRGKSHSPFCGDNQQHSIKDNLTMGSQVSHGNLRRGLVRHPETSSSNQYHGNTGNHLNTERFHVYLRKSLIFFVQLTAKFPLVIIFLLIVLYAIPASAAILALYVLVTILFALPSFLILYFSYPSLDWLVREIIT*

>Glyma13g05870.6   sequence type=predicted peptide   gene model=Glyma13g05870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWNFASNCIAGTVGLKNDSKPTHSASECSDDENSVIGREEGLECPICWESFNIVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPWCNLLSFRLVYRGNLKFPRKNYFLLWMVESMNGDRGKSHSPFCGDNQQHSIKDNLTMGSQVSHGNLRRGLVRHPETSSSNQYHGNTGNHLNTERFHVYLRKSLIFFVQLTAKFPLVIIFLLIVLYAIPASAAILALYVLVTILFALPSFLILYFSYPSLDWLVREIIT*

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