SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G39410 | AT | Annotation by Michelle Graham. TAIR10: Saccharopine dehydrogenase | chr5:15768415-15770274 REVERSE LENGTH=454 | SoyBase | E_val: 0 | ISS |
| GO:0006333 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly | SoyBase | N/A | ISS |
| GO:0007623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: circadian rhythm | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG2733 | KOG | Uncharacterized membrane protein | JGI | ISS | |
| PTHR12286 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF03435 | PFAM | Saccharopine dehydrogenase | JGI | ISS | |
| UniRef100_B6T3D2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Saccharopine dehydrogenase n=1 Tax=Zea mays RepID=B6T3D2_MAIZE | SoyBase | E_val: 9.00E-158 | ISS |
| UniRef100_I1LWP4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWP4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g05840 not represented in the dataset |
Glyma13g05840 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g059300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g05840.1 sequence type=CDS gene model=Glyma13g05840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGTGTCAGCAGCAAAGTTCGATGTGGTAATCCTAGGAGCCTCAGGTTTCACCGGCAAGCAAGTCCTCAAAGAAGCCCTCAAATTCCTCAATTCCAACCATTTCACCTCCCTCGCCATAGCGGGCCGCGACCCCTCCAAGCTGGCCCAAACCCTCAAATGGGCCGCTCAGCCCAACCCGCCGCCCCAAATCCCCATCCTCGCCGCCGACACCGCCGACCCTCCCTCCCTCCGTTCCCTCTGCGACCAGACCCGCCTCCTCCTCAACTGCGTGGGCCCCTTCCGCCGCCATGGCGAACCCGTCGTGGCGGCGTGCGTCGCGTGCGGCTGCGACTACCTCGACATCACGGGCGAGTCGGAGTTCATGGAGCGCGTGGAGCGTGAGTACCACGCGGAGGCAACAAAAAAGGGTTCTTTGGTGGTTTCGGCGTGTGGGTTCGACTCGGTTCCAGCGGAGATGGGCTTTTTGTTCCATTCGAGGCAGTGGGTGGGCCCGGCCCGGCCCAACAGGGTGGGGGCGTACCTGAGTTTGGAATCGGATAAGAGAATTGTGGGGAACTTTGGGACGTTTGAGTCTGCGGTTATGGCTGTGAAGGATTTGAAGGAAATGGAACGTTCTAGAGTCACCAGAGTGATCCCTGAGATTCCTGGGCCCCCACCTAAAGGAGAAATAATAGAACACCAGAAGAAAATTGGCCTTTGGGGAGTAACACTACCTTCAGCGGATGCAACTCTTGTTGGAAGAACACTTTCTACTCTAACTGAATCCCCCCATGGTCTTCCTGGGTTGAATGAGAATGCTGAGATGGTTGAAAAAAGGAAAGCCTACTGGACATCCGTGAAGCCGGCTCATTTTGGTGTGAAGATAGGCTCAAAATCTTTGTTGCACGTGTTCGGATTTATTCTTATTGGAATAATCATTGGTGTTTTAGGAAGAACCTCTTTTGGAAGATGGCTTCTTTTGAAGTATCCTTCCATCTTCACCTTTGGCGGGTTCAGTAAGAATGGTCCTTCTGAAGAGGAGATTGCAAGTGCTTCATTCAAGATGTGGTTTGTTGGACATGGTTTCAGCAATGAGAGTCTTGCTGCACAGGGAAACACAAAACCTGACATGGAGATTATAACAAGAGTAATGGGACCTGAAATGGGTTATGTAACCACCCCAATAATTATGGTTCAGTGCGCTCTCGTTCTTCACGGCCAAAGAAAGAATCTACCAAAGGGAGGTGTTTACACTCCAGGGATTGTATTTGGTCCAACTGATCTCCAGGAAAGACTTCAACAAAATGGAATATCTTTTGATGTCATCTCGAAAAGCTCTATTTCTTCTTGA
>Glyma13g05840.1 sequence type=predicted peptide gene model=Glyma13g05840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVSAAKFDVVILGASGFTGKQVLKEALKFLNSNHFTSLAIAGRDPSKLAQTLKWAAQPNPPPQIPILAADTADPPSLRSLCDQTRLLLNCVGPFRRHGEPVVAACVACGCDYLDITGESEFMERVEREYHAEATKKGSLVVSACGFDSVPAEMGFLFHSRQWVGPARPNRVGAYLSLESDKRIVGNFGTFESAVMAVKDLKEMERSRVTRVIPEIPGPPPKGEIIEHQKKIGLWGVTLPSADATLVGRTLSTLTESPHGLPGLNENAEMVEKRKAYWTSVKPAHFGVKIGSKSLLHVFGFILIGIIIGVLGRTSFGRWLLLKYPSIFTFGGFSKNGPSEEEIASASFKMWFVGHGFSNESLAAQGNTKPDMEIITRVMGPEMGYVTTPIIMVQCALVLHGQRKNLPKGGVYTPGIVFGPTDLQERLQQNGISFDVISKSSISS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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