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Report for Sequence Feature Glyma13g05840

Feature Type:gene_model
Chromosome:Gm13
Start:6155529
stop:6158753
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g05840
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G39410AT Annotation by Michelle Graham. TAIR10: Saccharopine dehydrogenase | chr5:15768415-15770274 REVERSE LENGTH=454 SoyBaseE_val: 0ISS
GO:0006333GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly SoyBaseN/AISS
GO:0007623GO-bp Annotation by Michelle Graham. GO Biological Process: circadian rhythm SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
KOG2733 KOG Uncharacterized membrane protein JGI ISS
PTHR12286Panther UNCHARACTERIZED JGI ISS
PF03435PFAM Saccharopine dehydrogenase JGI ISS
UniRef100_B6T3D2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Saccharopine dehydrogenase n=1 Tax=Zea mays RepID=B6T3D2_MAIZE SoyBaseE_val: 9.00E-158ISS
UniRef100_I1LWP4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWP4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g05840
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g05840 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g059300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g05840
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g05840
>Glyma13g05840.1   sequence type=CDS   gene model=Glyma13g05840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGTGTCAGCAGCAAAGTTCGATGTGGTAATCCTAGGAGCCTCAGGTTTCACCGGCAAGCAAGTCCTCAAAGAAGCCCTCAAATTCCTCAATTCCAACCATTTCACCTCCCTCGCCATAGCGGGCCGCGACCCCTCCAAGCTGGCCCAAACCCTCAAATGGGCCGCTCAGCCCAACCCGCCGCCCCAAATCCCCATCCTCGCCGCCGACACCGCCGACCCTCCCTCCCTCCGTTCCCTCTGCGACCAGACCCGCCTCCTCCTCAACTGCGTGGGCCCCTTCCGCCGCCATGGCGAACCCGTCGTGGCGGCGTGCGTCGCGTGCGGCTGCGACTACCTCGACATCACGGGCGAGTCGGAGTTCATGGAGCGCGTGGAGCGTGAGTACCACGCGGAGGCAACAAAAAAGGGTTCTTTGGTGGTTTCGGCGTGTGGGTTCGACTCGGTTCCAGCGGAGATGGGCTTTTTGTTCCATTCGAGGCAGTGGGTGGGCCCGGCCCGGCCCAACAGGGTGGGGGCGTACCTGAGTTTGGAATCGGATAAGAGAATTGTGGGGAACTTTGGGACGTTTGAGTCTGCGGTTATGGCTGTGAAGGATTTGAAGGAAATGGAACGTTCTAGAGTCACCAGAGTGATCCCTGAGATTCCTGGGCCCCCACCTAAAGGAGAAATAATAGAACACCAGAAGAAAATTGGCCTTTGGGGAGTAACACTACCTTCAGCGGATGCAACTCTTGTTGGAAGAACACTTTCTACTCTAACTGAATCCCCCCATGGTCTTCCTGGGTTGAATGAGAATGCTGAGATGGTTGAAAAAAGGAAAGCCTACTGGACATCCGTGAAGCCGGCTCATTTTGGTGTGAAGATAGGCTCAAAATCTTTGTTGCACGTGTTCGGATTTATTCTTATTGGAATAATCATTGGTGTTTTAGGAAGAACCTCTTTTGGAAGATGGCTTCTTTTGAAGTATCCTTCCATCTTCACCTTTGGCGGGTTCAGTAAGAATGGTCCTTCTGAAGAGGAGATTGCAAGTGCTTCATTCAAGATGTGGTTTGTTGGACATGGTTTCAGCAATGAGAGTCTTGCTGCACAGGGAAACACAAAACCTGACATGGAGATTATAACAAGAGTAATGGGACCTGAAATGGGTTATGTAACCACCCCAATAATTATGGTTCAGTGCGCTCTCGTTCTTCACGGCCAAAGAAAGAATCTACCAAAGGGAGGTGTTTACACTCCAGGGATTGTATTTGGTCCAACTGATCTCCAGGAAAGACTTCAACAAAATGGAATATCTTTTGATGTCATCTCGAAAAGCTCTATTTCTTCTTGA
Predicted protein sequences of Glyma13g05840
>Glyma13g05840.1   sequence type=predicted peptide   gene model=Glyma13g05840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVSAAKFDVVILGASGFTGKQVLKEALKFLNSNHFTSLAIAGRDPSKLAQTLKWAAQPNPPPQIPILAADTADPPSLRSLCDQTRLLLNCVGPFRRHGEPVVAACVACGCDYLDITGESEFMERVEREYHAEATKKGSLVVSACGFDSVPAEMGFLFHSRQWVGPARPNRVGAYLSLESDKRIVGNFGTFESAVMAVKDLKEMERSRVTRVIPEIPGPPPKGEIIEHQKKIGLWGVTLPSADATLVGRTLSTLTESPHGLPGLNENAEMVEKRKAYWTSVKPAHFGVKIGSKSLLHVFGFILIGIIIGVLGRTSFGRWLLLKYPSIFTFGGFSKNGPSEEEIASASFKMWFVGHGFSNESLAAQGNTKPDMEIITRVMGPEMGYVTTPIIMVQCALVLHGQRKNLPKGGVYTPGIVFGPTDLQERLQQNGISFDVISKSSISS*






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