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Report for Sequence Feature Glyma13g05830

Feature Type:gene_model
Chromosome:Gm13
Start:6144191
stop:6148292
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G29200AT Annotation by Michelle Graham. TAIR10: chorismate mutase 1 | chr3:11164582-11166258 REVERSE LENGTH=340 SoyBaseE_val: 6.00E-142ISS
GO:0006007GO-bp Annotation by Michelle Graham. GO Biological Process: glucose catabolic process SoyBaseN/AISS
GO:0009073GO-bp Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process SoyBaseN/AISS
GO:0046417GO-bp Annotation by Michelle Graham. GO Biological Process: chorismate metabolic process SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0004106GO-mf Annotation by Michelle Graham. GO Molecular Function: chorismate mutase activity SoyBaseN/AISS
GO:0016688GO-mf Annotation by Michelle Graham. GO Molecular Function: L-ascorbate peroxidase activity SoyBaseN/AISS
KOG0795 KOG Chorismate mutase JGI ISS
PTHR21145Panther CHORISMATE MUTASE JGI ISS
PF01817PFAM Chorismate mutase type II JGI ISS
UniRef100_D0VBC0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Chorismate mutase 02 n=1 Tax=Vitis vinifera RepID=D0VBC0_VITVI SoyBaseE_val: 2.00E-146ISS
UniRef100_I1LWP2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWP2_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g05830 not represented in the dataset

Glyma13g05830 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma19g03290 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g059400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g05830.2   sequence type=transcript   gene model=Glyma13g05830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTGGTGTGGTCACTCACATCTCCACCTACTGCGTTTCAGGAGTCGACAACCTTTGAATTTCTCATTTCTCATCCACTAACTTCTTTCTCAATCCCTCTTTTTCTTTTTTATGTTTTAAACTCTTTTAAAAGCTTCTTCCCTCTTTGCCGAATTTTCCATAAACCACATTCTTGTTGGTTCTCTTTCAATGGAGTCTAAGCTTTTAAGAGCCACCACCATCTCAGTCCCTTCAACACCCTCATGCGCTTTCCATCGCACAACTCGCAAGGCTTCGATTTCCTTCAACCCCACCTCGGATTTCGCCCCAAAAAGCAATCTTTCTCTCCAGGCACATGCGGCTTCCATCGAGTCAGTGCCAACAAAGAAAAGAATTGATGAGAGTGACAACCTGACCCTTGATCATATAAGACGTTCTTTAGTTCGTCAAGAGGATAGCATAATCTTCAGTCTCATCGAGCGAGCACAATACTGTTACAATGAAGATACATATGACCCTGATGCCTTCTCCATGGATGGATTTCATGGCTCATTGGTTGAGTACATGGTCGGGGAAACTGAGAGGCTTCATGCCAAGGTGGGTAGGTACAAGAGCCCTGATGAGCATCCATTCTTTCCAGATGGCCTACCCGAACCAGTGTTACCACCTTTGCAGTACCCTCAGGCTCTCTCAAAGAGAATTCATTATGGAAAATATGTAGCTGAGGCAAAATACCAAGCTAGTCCAGATTCATATAAAGATGCCATTATAGCACAGGACAAGGACAAGTTGATGGAATTGCTAACATATCCTGAAGTTGAAGAGGCAATTAAGAGGAGAGTTGACATGAAGACCAAGACTTATGGGCAAGAACTGGTTGTAACTACGAAGGAACATCGAACTGAACCTGTCTACAAAATAAATCCAAGCTTGGTTGCTGATCTATACAGTGATTGGATCATGCCATTGACAAAGGAAGTCCAAGTTTCTTATTTATTGAGAAGGTTGGATTGAACATAACAAAAAGTACCTTTTCAATTACAGTGTTCATAGGGTATTTATATTTTCTAGGAAATGATACTTGCAATGGGTAATTTCTCTTGAATCATGACTATAAACTTTAGTTTTTGTAATTAACATATGAGGAAGCTCATATTGGGTTCTTATATAATAATTAATGGCATCCTTTATGTTGTTT

>Glyma13g05830.1   sequence type=CDS   gene model=Glyma13g05830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCTAAGCTTTTAAGAGCCACCACCATCTCAGTCCCTTCAACACCCTCATGCGCTTTCCATCGCACAACTCGCAAGGCTTCGATTTCCTTCAACCCCACCTCGGATTTCGCCCCAAAAAGCAATCTTTCTCTCCAGGCACATGCGGCTTCCATCGAGTCAGTGCCAACAAAGAAAAGAATTGATGAGAGTGACAACCTGACCCTTGATCATATAAGACGTTCTTTAGTTCGTCAAGAGGATAGCATAATCTTCAGTCTCATCGAGCGAGCACAATACTGTTACAATGAAGATACATATGACCCTGATGCCTTCTCCATGGATGGATTTCATGGCTCATTGGTTGAGTACATGGTCGGGGAAACTGAGAGGCTTCATGCCAAGGTGGGTAGGTACAAGAGCCCTGATGAGCATCCATTCTTTCCAGATGGCCTACCCGAACCAGTGTTACCACCTTTGCAGTACCCTCAGGTGTTGCACCCTATTGCTGATTCAATTAATATAAATGAAAAAGTATGGAGTTTATACTTCAGAGTTCTTATCCCACAAATAGTCAAACAAGGGGATGATGGTAACTCTGGATCCAGTGCTGTTTGTGATGTAATATGCTTGCAGGCTCTCTCAAAGAGAATTCATTATGGAAAATATGTAGCTGAGGCAAAATACCAAGCTAGTCCAGATTCATATAAAGATGCCATTATAGCACAGGACAAGGACAAGTTGATGGAATTGCTAACATATCCTGAAGTTGAAGAGGCAATTAAGAGGAGAGTTGACATGAAGACCAAGACTTATGGGCAAGAACTGGTTGTAACTACGAAGGAACATCGAACTGAACCTGTCTACAAAATAAATCCAAGCTTGGTTGCTGATCTATACAGTGATTGGATCATGCCATTGACAAAGGAAGTCCAAGTTTCTTATTTATTGAGAAGGTTGGATTGA

>Glyma13g05830.2   sequence type=CDS   gene model=Glyma13g05830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCTAAGCTTTTAAGAGCCACCACCATCTCAGTCCCTTCAACACCCTCATGCGCTTTCCATCGCACAACTCGCAAGGCTTCGATTTCCTTCAACCCCACCTCGGATTTCGCCCCAAAAAGCAATCTTTCTCTCCAGGCACATGCGGCTTCCATCGAGTCAGTGCCAACAAAGAAAAGAATTGATGAGAGTGACAACCTGACCCTTGATCATATAAGACGTTCTTTAGTTCGTCAAGAGGATAGCATAATCTTCAGTCTCATCGAGCGAGCACAATACTGTTACAATGAAGATACATATGACCCTGATGCCTTCTCCATGGATGGATTTCATGGCTCATTGGTTGAGTACATGGTCGGGGAAACTGAGAGGCTTCATGCCAAGGTGGGTAGGTACAAGAGCCCTGATGAGCATCCATTCTTTCCAGATGGCCTACCCGAACCAGTGTTACCACCTTTGCAGTACCCTCAGGCTCTCTCAAAGAGAATTCATTATGGAAAATATGTAGCTGAGGCAAAATACCAAGCTAGTCCAGATTCATATAAAGATGCCATTATAGCACAGGACAAGGACAAGTTGATGGAATTGCTAACATATCCTGAAGTTGAAGAGGCAATTAAGAGGAGAGTTGACATGAAGACCAAGACTTATGGGCAAGAACTGGTTGTAACTACGAAGGAACATCGAACTGAACCTGTCTACAAAATAAATCCAAGCTTGGTTGCTGATCTATACAGTGATTGGATCATGCCATTGACAAAGGAAGTCCAAGTTTCTTATTTATTGAGAAGGTTGGATTGA

>Glyma13g05830.1   sequence type=predicted peptide   gene model=Glyma13g05830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESKLLRATTISVPSTPSCAFHRTTRKASISFNPTSDFAPKSNLSLQAHAASIESVPTKKRIDESDNLTLDHIRRSLVRQEDSIIFSLIERAQYCYNEDTYDPDAFSMDGFHGSLVEYMVGETERLHAKVGRYKSPDEHPFFPDGLPEPVLPPLQYPQVLHPIADSININEKVWSLYFRVLIPQIVKQGDDGNSGSSAVCDVICLQALSKRIHYGKYVAEAKYQASPDSYKDAIIAQDKDKLMELLTYPEVEEAIKRRVDMKTKTYGQELVVTTKEHRTEPVYKINPSLVADLYSDWIMPLTKEVQVSYLLRRLD*

>Glyma13g05830.2   sequence type=predicted peptide   gene model=Glyma13g05830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESKLLRATTISVPSTPSCAFHRTTRKASISFNPTSDFAPKSNLSLQAHAASIESVPTKKRIDESDNLTLDHIRRSLVRQEDSIIFSLIERAQYCYNEDTYDPDAFSMDGFHGSLVEYMVGETERLHAKVGRYKSPDEHPFFPDGLPEPVLPPLQYPQALSKRIHYGKYVAEAKYQASPDSYKDAIIAQDKDKLMELLTYPEVEEAIKRRVDMKTKTYGQELVVTTKEHRTEPVYKINPSLVADLYSDWIMPLTKEVQVSYLLRRLD*







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