|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G52530 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Hus1-like protein (InterPro:IPR007150); Has 129 Blast hits to 128 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 57; Fungi - 10; Plants - 47; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr1:19569045-19570004 FORWARD LENGTH=319 | SoyBase | E_val: 3.00E-178 | ISS |
GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
KOG3999 | KOG | Checkpoint 9-1-1 complex, HUS1 component | JGI | ISS | |
PTHR12900 | Panther | MITOTIC AND DNA DAMAGE CHECKPOINT PROTEIN HUS1 | JGI | ISS | |
PF04005 | PFAM | Hus1-like protein | JGI | ISS | |
UniRef100_I1LWN8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWN8_SOYBN | SoyBase | E_val: 0 | ISS |
UniRef100_Q9SSQ5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F6D8.25 n=2 Tax=Arabidopsis thaliana RepID=Q9SSQ5_ARATH | SoyBase | E_val: 4.00E-175 | ISS |
Glyma13g05780 not represented in the dataset |
Glyma13g05780 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.13g059800 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g05780.1 sequence type=CDS gene model=Glyma13g05780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAATTCAAGGCCTTCGTGACCGACAACGGCGTGCAGCTCCTGGAGAGGCGGTTCCTCCCGGCCCTGGAGAGAACGGGAAAATCGTGCCACCTCTTCCTCACGCGCGACCACGCCATGTTCCTCCACCTCCTCAACGGCGACGGCGTCCAGTGCCTCGCGCAGTTCCGCAAGGAGGCGCTCTTCCACGACTACCGCATATCCAGCCAGAACGACGACCGCATCGCCTTCGCTCTCGACCTCTCCCTCCTCCTCCGCGCCCTCCGCAGCGCCGTCGCCGTCGCCTCCTCCGCCTCCGCTTCCTCCGCCCCCACGCGCCTCGAGATCAAGCTCGTCAAGAAACTTCCCCCTAATTCCACCCAGCCCATGCCCTACCTCACATTGGAAACTCGCGGGTATAAGTCTGCGGTTATTCAGGATATTCCCATCTCCAAACCCTTGTCGCGGGCGCAGGTTACCGAGCTTCAGAGCGCGCTCGATACGGCGCAAGATCTCCCTCAAACACTCGTTCAGGTGCCTGATTTGAATCAATTGTTAAACTTGGTGGATCGGATGAAGCAGGTGGGCGATGTTGTGAATGTGTTCATAAGTAAGCATGGGGATTTGAGCGTGCAGGTTTCAACCACGCTGATTAGTTTGGGTGCTGAGTTTCGGAGACTGGTGGTGATTGGAGAGAAAACTAATGCTCCTGCTGAAGATCAAAATCTCAGTGCTCAGACAAGATCATCGAGGTCCATTTCGAGAGGAGATGGGCAATATGTGCAGGTGAGTGTTAAGCACTTCGCCAAAAGCCTCCAGTGTCACTTGACCAGACCAGACTGCACTTTCTTTGGGATTGCTCCGCAGGGTAGTTGCCTGACGGTGATATTTCAGTTCTTTGTCCCAGGTTCTCGCCAGACTGATAAATCAATCAGCTTGCATTGCAGGCTTCCTGTTCTTGACCCTGGTTCTGGTTAA
>Glyma13g05780.1 sequence type=predicted peptide gene model=Glyma13g05780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKFKAFVTDNGVQLLERRFLPALERTGKSCHLFLTRDHAMFLHLLNGDGVQCLAQFRKEALFHDYRISSQNDDRIAFALDLSLLLRALRSAVAVASSASASSAPTRLEIKLVKKLPPNSTQPMPYLTLETRGYKSAVIQDIPISKPLSRAQVTELQSALDTAQDLPQTLVQVPDLNQLLNLVDRMKQVGDVVNVFISKHGDLSVQVSTTLISLGAEFRRLVVIGEKTNAPAEDQNLSAQTRSSRSISRGDGQYVQVSVKHFAKSLQCHLTRPDCTFFGIAPQGSCLTVIFQFFVPGSRQTDKSISLHCRLPVLDPGSG*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||