Glyma13g05670 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g05670

Feature Type:	gene_model
Chromosome:	Gm13
Start:	6012518
stop:	6014272
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g05670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15340	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr5:4982273-4984144 REVERSE LENGTH=623	SoyBase	E_val: 2.00E-177	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7KKZ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7KKZ3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LWM7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWM7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g05670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g05670

Paralog	Evidence	Comments
Glyma19g03080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g05670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g060800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g05670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g05670

Limit To All Plant Sequences

>Glyma13g05670.2   sequence type=CDS   gene model=Glyma13g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGGGGACAGCAACCTCGTGCCTCAAATGCACGTGGGTGTGGTGAGGTTCGGGTTTTTGAGGCACACCAAGGTTTTGAATGGAGTGATGGATGGTTATGTCAAGTGTGGGATTGTGGGGCCTAGTGTTGTGTCTTGGACTGTGGTGCTGGAAGGTATCGTGAAATGGGAGGGTGTGGAGAGTGGGAGAGTGGTGTTTGATGAAATGCCTGTGAGAAATGAGGTTGGTTGGACTGTTATGATAAAGGGGTATGTTGGGAGTGGGGTTTACAAAGGAGTTACTTTGTGTTCTGTTTTGTCTGCTTGTTCTCAATCTGGGGATGTGAGTGTGGGAAGGTGGGTTCATTGTTATGCTGTTAAGGCTGTGGGGTGGGATTTGGGTGTTATGATGGGGACATGTTTGGCTGACATGTATGCCAAATGTGGGGGGATAAGTTCTGCTTTGATGGTGTTTAGGCATATGCTAAGGAGGAATGTGGTGGCATGGAATGCCATGCTTGGTGGGTTGGCCATGCATGGGATGGGGAAGGTTCTAGTGGAGATGTTTGGTTCCATGGTGGAAGAGGTGAAGCCTGATGCTGTGACTTTCATGGCTTTGTTAAGTTCTTGTAGCCATTCGGGTCTAGTTGAACAAGGTCTGCAGTATTTTCATGATCTCGAGTCTGTTTATGGGGTGAGGCCGGAAATTGAGCATTATGCTTGCATGGATTTGGTGAAGAAGATGCCAATTCCACCAAATGAAATTGTTTTGGGGTCCCTTTTGGGCGCTTGTTATTCACATGGTAAGTTGAGGCTGGGGGAGAAGATTATGAGAGAGTTGGTTCAGATGGATCCCCTCAACACAGAATATCATATTCTTCTTTCAAACATGTATGCATTGTGTGGAAGAGTAGACAAGGAAAATTCCCTTAGGAAGGTTCTTAAGAGTAGGGGTATCAGAAAGGTGCCAGGAATGAGCTCCATATATGTAGATGGCCAACTTCATCGGTTCATTGCTGGGGATAAGTCACACCCAAGAACTGCAGATATTTACATGAAGCTTGATGACATGATATGCAAGCTGAGGTTGGCTGGCTATGGTCCCAACACAAATTGCCAATTTCTGTTTGGTTGTCCCAATGGGGATGATTGCATGGAAGCAATGGAGGAGGTAGAACAAGTGTTGTTCACTCATAGTGAGAAGCTAGCACTTTGTTTTGGCCTAATGAGCAAACCATCTGGTTCTCCCCTATATATTTTCAAGAACTTAAGGATATGCCAGGATTGGCATTCTGCTATTAAGATTGCTTCTGATATATACAAACGTGAAATTGTTGTTCGAGATCGTTATCGTTTTCATAGTTTCAAGCAAGGTTCTTGTTCTTGCTCTGACTATTGGTGA

Predicted protein sequences of Glyma13g05670

Limit To All Plant Sequences

>Glyma13g05670.2   sequence type=predicted peptide   gene model=Glyma13g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LGDSNLVPQMHVGVVRFGFLRHTKVLNGVMDGYVKCGIVGPSVVSWTVVLEGIVKWEGVESGRVVFDEMPVRNEVGWTVMIKGYVGSGVYKGVTLCSVLSACSQSGDVSVGRWVHCYAVKAVGWDLGVMMGTCLADMYAKCGGISSALMVFRHMLRRNVVAWNAMLGGLAMHGMGKVLVEMFGSMVEEVKPDAVTFMALLSSCSHSGLVEQGLQYFHDLESVYGVRPEIEHYACMDLVKKMPIPPNEIVLGSLLGACYSHGKLRLGEKIMRELVQMDPLNTEYHILLSNMYALCGRVDKENSLRKVLKSRGIRKVPGMSSIYVDGQLHRFIAGDKSHPRTADIYMKLDDMICKLRLAGYGPNTNCQFLFGCPNGDDCMEAMEEVEQVLFTHSEKLALCFGLMSKPSGSPLYIFKNLRICQDWHSAIKIASDIYKREIVVRDRYRFHSFKQGSCSCSDYW*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain