Glyma13g05660 - SoyBase

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Report for Sequence Feature Glyma13g05660

Feature Type:	gene_model
Chromosome:	Gm13
Start:	5988891
stop:	5991154
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g05660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39530	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1997) \| chr5:15826285-15827517 REVERSE LENGTH=239	SoyBase	E_val: 2.00E-36	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF09366	PFAM	Protein of unknown function (DUF1997)	JGI		ISS
UniRef100_I1LWM6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWM6_SOYBN	SoyBase	E_val: 2.00E-139	ISS
UniRef100_Q10R85	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa Japonica Group RepID=Q10R85_ORYSJ	SoyBase	E_val: 8.00E-27	ISS

Expression Patterns of Glyma13g05660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g05660

Paralog	Evidence	Comments
Glyma19g03060	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g05660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma13g05660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g05660

Limit To All Plant Sequences

>Glyma13g05660.3   sequence type=CDS   gene model=Glyma13g05660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGCCTTCTCATGATTCCTTGCCAGCATCTATTGCTAAAGAAGTTGCAAAGGCATTGTCATAGAAAGGCAGCATCAAACTCCATTAGGAGTGAGAAAACTTCCTCATTCAGTTTCAGAAGCAATGCCAATGTTCCTTTTCATGAATTGCCTGGGGCTTCCTTTGATCAATACATGGATGACAAGCACAGAGTGCTAAGAGCTGTGTTTTCTGATGACAAAGGAACAACTAAACAGCTCAATGAGGAAGAGTGGAGGATCAAAATGCCTCCCATACAATGCTTATTTTTGAGTGTCAATCCAACAGCAGATGTCAGCTTCTACAAGGATCCTTACCAAATCAGCATAGATGTTAGAGGTTCTTTATACCCAGAAAGGAAGGGAAAACATAGTTGGCTCAAGAATCAAATGGTGATGACGATAACCTTTTGTGCTTCTCCAGCAATAGCTTTCATTCCTGAAAATGTCTTACAAGATGCCATAGAGCTGATTTTCAAAACAGTGTGGGATGAAATGAAGCATGAATTCCATGGTAGACTATTGGAAGATTATAACAGGTTCAAGAGAAACAAATCCAAGAAGAACTCTGTATAA

Predicted protein sequences of Glyma13g05660

Limit To All Plant Sequences

>Glyma13g05660.3   sequence type=predicted peptide   gene model=Glyma13g05660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLLMIPCQHLLLKKLQRHCHRKAASNSIRSEKTSSFSFRSNANVPFHELPGASFDQYMDDKHRVLRAVFSDDKGTTKQLNEEEWRIKMPPIQCLFLSVNPTADVSFYKDPYQISIDVRGSLYPERKGKHSWLKNQMVMTITFCASPAIAFIPENVLQDAIELIFKTVWDEMKHEFHGRLLEDYNRFKRNKSKKNSV*

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