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Report for Sequence Feature Glyma13g05570

Feature Type:gene_model
Chromosome:Gm13
Start:5935251
stop:5938721
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g05570
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15330AT Annotation by Michelle Graham. TAIR10: SPX domain gene 4 | chr5:4980595-4982043 FORWARD LENGTH=318 SoyBaseE_val: 5.00E-127ISS
GO:0006817GO-bp Annotation by Michelle Graham. GO Biological Process: phosphate ion transport SoyBaseN/AISS
GO:0016036GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG1161 KOG Protein involved in vacuolar polyphosphate accumulation, contains SPX domain JGI ISS
PTHR10783Panther XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIRUS RECEPTOR JGI ISS
PTHR10783:SF5Panther XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIRUS RECEPTOR IDS-4 JGI ISS
PF03105PFAM SPX domain JGI ISS
UniRef100_C6TFG5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TFG5_SOYBN SoyBaseE_val: 0ISS
UniRef100_G7LDX2UniRef Annotation by Michelle Graham. Most informative UniRef hit: SPX-domain protein n=1 Tax=Medicago truncatula RepID=G7LDX2_MEDTR SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g05570
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g05570 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g061700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g05570
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g05570
>Glyma13g05570.1   sequence type=CDS   gene model=Glyma13g05570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATTTGGGAAAGAGTTCAAGACCCATTTGGAAGACACCATCCCTGAGTGGAGGGACAAGTTCCTTTGCTACAAACCATTGAAGAAGCTTCTCAAACAGAACCTTCCTTCAATCACTACCGCCATCACTGATATACCCATCAATCTCCCTCTTCACCTTCTCCAACAACCCTCTTCGCCACAACTTCTTCAGGCTTGGTTCGTGAGGATTCTCAATGAAGAGCTTGAAAAGTTCAATGATTTCTATGTGGACAAAGAGGAAGAGTTTGTTATTCGCTTCCAGGAGCTGAAGGAGAGAATTGAGTGTCTTAAAGAAAAAAGCAGCCAGGGTGAAGTGTACACTTCTGACTGTGAATTCAGTGAAGAAATGATGGACATCAGGAAGGACTTGGTCACCATCCATGGAGAGATGGTGCTCCTCAAAAACTACAGTTCATTAAACTTTGCAGGACTAGTTAAAATTTTGAAGAAGTATGATAAAAGAACTGGTGGGTTGTTGCGTCTGCCTTTTACACAACTTGTTCTTCGTCAACCTTTTTTCACGACTGAACCTCTCACAAGGTTAGTCCATGAATGTGAGGAAAATCTAGAGCTGCTCTTTCCCCTGCAAGCAGAAGTAATCCAATCTACTCCCCCTCCAGAAAATCAGTCTAGACCACCGGTAGATAGCGCAACAAATGCCTTACCTGAGGCATCCTCAACTCTTGGGGATGAAACTGTGTACATATATCGTAGCACTCTTGCTGCTATGAGAGCCATAAAGGGTCTTCAGAAAGCAAGCTCCACCTCCAATCCATTTTCGTTTTCATCCCTTTTTAGCAACCAAGATGGTGATGGTACTGGTGCTGTAACTGCTGAAAACTCTGCCGCAAATTCTCCAGCTACCTTGCAGAATGAAGAAAGCGTTGGTAAAGAGGAAACTGATTCTGTGTAG
Predicted protein sequences of Glyma13g05570
>Glyma13g05570.1   sequence type=predicted peptide   gene model=Glyma13g05570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFGKEFKTHLEDTIPEWRDKFLCYKPLKKLLKQNLPSITTAITDIPINLPLHLLQQPSSPQLLQAWFVRILNEELEKFNDFYVDKEEEFVIRFQELKERIECLKEKSSQGEVYTSDCEFSEEMMDIRKDLVTIHGEMVLLKNYSSLNFAGLVKILKKYDKRTGGLLRLPFTQLVLRQPFFTTEPLTRLVHECEENLELLFPLQAEVIQSTPPPENQSRPPVDSATNALPEASSTLGDETVYIYRSTLAAMRAIKGLQKASSTSNPFSFSSLFSNQDGDGTGAVTAENSAANSPATLQNEESVGKEETDSV*






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