Glyma13g05550 - SoyBase

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Report for Sequence Feature Glyma13g05550

Feature Type:	gene_model
Chromosome:	Gm13
Start:	5895268
stop:	5898671
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g05550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15310	AT	Annotation by Michelle Graham. TAIR10: myb domain protein 16 \| chr5:4974894-4976106 FORWARD LENGTH=326	SoyBase	E_val: 5.00E-124	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009739	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG0048	KOG	Transcription factor, Myb superfamily	JGI		ISS
PTHR10641	Panther	MYB-RELATED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_G3FSI3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MIXTA-like transcription factor n=1 Tax=Lotus japonicus RepID=G3FSI3_LOTJA	SoyBase	E_val: 2.00E-172	ISS
UniRef100_UPI000233BDD7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BDD7 related cluster n=1 Tax=unknown RepID=UPI000233BDD7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g05550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g05550

Paralog	Evidence	Comments
Glyma19g02890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g05550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g061900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g05550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g05550

Limit To All Plant Sequences

>Glyma13g05550.2   sequence type=CDS   gene model=Glyma13g05550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACGATCACCATGTTGCGACAAGGTAGGTTTAAAGAAAGGACCATGGACTCCTGAGGAAGATCAGAAGCTCTTAGCTTATATTGAAGAACATGGCCATGGAAGCTGGCGTGCCTTGCCAGCAAAAGCTGGACTTCAGAGGTGTGGCAAGAGTTGCAGACTAAGATGGACCAATTATCTCAGGCCTGACATTAAGAGGGGAAAGTTCAGTTTGCAAGAAGAACAAACCATCATTCAACTCCATGCCCTCTTAGGAAACAGGTGGTCGGCAATAGCCACACACTTGCCAAAGAGAACGGACAATGAGATCAAGAACTATTGGAATACGCATCTTAAGAAAAGGTTAACCAAAATGGGAATTGACCCTGTGACACACAAGCCTAAAAACGATGCACTTCTCTCTAGTGACGGCCAATCCAAAACCGCTGCAAACCTCAGCCACATGGCTCAGTGGGAGAGTGCTCGCCTTGAAGCTGAAGCAAGACTTGTAAGAGAGTCAAAAATACGTTCACATTCACTTCAGCAACAATTTGGAAGTAGTTCTTCTACATTTGCATCTTCTTCTTCTGCATCAACTTCAGCTTCAGCTCTCAATAATAATAGTAATAATAAGCCGGAAGCACCCCCGCCACCGCCACCGCCGCCACCACCGTCGCCACCACCGTCGCGATCTTCTCTTGATGTTCTGAAGGCTTGGAATAGTGGAGGGTGGCTAAAATCTAATGAAGGAAGCGGTGCCATTGCAAGCAATGTTGGGGTAAGTGGGGACCTTGAGTCTCCTACTTCTACACTATCTTTCTCTGAGAATGCACCACCAATTATGAATGGAATTAGAGGAGAAAATAACAACAACAACAAGAATGATAGTGCAATGCCTATGATTGAGTTTGTGAGGATTTCAGGCAATTCTTCTTCTCTTGTGAAAGAAGAAGGTGAGCAAGAGTGGAAAGGTACTTATGATAGTTCCATCACTACTTTTAGTTCTAGTCTGCATGAGTTCACTATGAACATGGAAGGCACGTGGGCCTCTGAGTCCCTTAGGACTAGTGGCTCACATGATGATGACATTGTTGAAGAAGGCTTCACCAATCTTTTGCTTAAAACAAACTCTGAGGACCCAAATTTATCATCGGAGGGTGGGGGACAGTCTAACAATGACGATGGTGGCGATGGAAGCAATAATGATTTTTATGAAGATAACAATAATTATTGGAACAGCATTCTCAACTTAGTGAATTCTTCCCCTTCTCATCCCCCTATGTTCTAA

Predicted protein sequences of Glyma13g05550

Limit To All Plant Sequences

>Glyma13g05550.2   sequence type=predicted peptide   gene model=Glyma13g05550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSDGQSKTAANLSHMAQWESARLEAEARLVRESKIRSHSLQQQFGSSSSTFASSSSASTSASALNNNSNNKPEAPPPPPPPPPPSPPPSRSSLDVLKAWNSGGWLKSNEGSGAIASNVGVSGDLESPTSTLSFSENAPPIMNGIRGENNNNNKNDSAMPMIEFVRISGNSSSLVKEEGEQEWKGTYDSSITTFSSSLHEFTMNMEGTWASESLRTSGSHDDDIVEEGFTNLLLKTNSEDPNLSSEGGGQSNNDDGGDGSNNDFYEDNNNYWNSILNLVNSSPSHPPMF*

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