Glyma13g05520 - SoyBase

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Report for Sequence Feature Glyma13g05520

Feature Type:	gene_model
Chromosome:	Gm13
Start:	5829790
stop:	5835945
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g05520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15270	AT	Annotation by Michelle Graham. TAIR10: RNA-binding KH domain-containing protein \| chr5:4958738-4960947 FORWARD LENGTH=548	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG2190	KOG	PolyC-binding proteins alphaCP-1 and related KH domain proteins	JGI		ISS
PTHR10288	Panther	RNA-BINDING PROTEIN RELATED	JGI		ISS
PTHR10288:SF53	Panther	KH DOMAIN-CONTAINING PROTEIN	JGI		ISS
PF00013	PFAM	KH domain	JGI		ISS
UniRef100_G7KKX1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Poly(RC)-binding protein n=1 Tax=Medicago truncatula RepID=G7KKX1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LWL4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWL4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g05520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g05520

Paralog	Evidence	Comments
Glyma19g02840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g05520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g062200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g05520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g05520

Limit To All Plant Sequences

>Glyma13g05520.4   sequence type=CDS   gene model=Glyma13g05520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGGCCAAAGGAGTGGTTATGGTAAGCGTCCCCACTCTCAATCTGACCATGATAATGGGCCAAATAAAAGGAGGAATCATGGTGATGATAGAGAGCAGTTTGTGATTGATTCGGAGGATACCGTGTATCGTTATGTGTGCCCGGGTCGAAAGATTGGCAGTGTTATTGGTAGGGGAGGTGAGATTGTTAAGCAACTGAGGGTGGAGACTAAGGCTAAGATTAGGATTGGTGAGACTGTGCCGGGGTGCGAAGAGCGCGTTGTTACTATTTATGGTCCCAGTGATGAGACTAATGCTGTTGAGGGTGGAGGCAATTATGTGTCTCCGGCTCAGGATGCTCTGTTTAAGGTGCATGACAGAGTGGTTGCTGAGGACTTTCACGGTGATCAGGATGACGATGGAGGCCAACAAGTGACTGCTAAGCTTCTAGTGCCATCTGATCAGATAGGTTGTGTTATTGGAAAAGGCGGGTCAATAGTTCAGAACATACGTGGTGAAACGGGGGCCCAGATTCGGATACTGAAGGATGATCATTTACCTATGTGCGCTTTGAGCTCTGATGAACTTGTGCAGATTACTGGGGATGCTGCAGTTGTGAAAAAGGCTCTTTATCAAATTGCATCTCGACTTCATGACAATCCTTCACGATCTCAGCATCTTCTTACTTCTGCTGTTTCTGGTGTATATCCTGCCGGTGGTTCGCTCATTGGTCCAGGTGCTGGAGCTCCAATTGTGGGGATAGCTCCTCTTGTTGGTTCTTATGGGGGATATAAAGGTGACACTGGTGACTGGCCACCGCGGTCCATGTACTCAGCTCCAAGGGACGAGGCATCTTCAAAGGAATTTTCAGTTCGATTGGTTTGTCCAACAGGAAACATTGGAGGTGTGATAGGAAAAGGTGGTATGATAATAAATCAAATTAGGCAAGATTCTGGGGCAACAATCAAAGTTGATAGTTCAACAATAGAAGGGGATGAATGCTTAATAGCCATTTCGACCAAAGAGTTCTTTGAAGAGACTTTCTCTCCAACAATAGAAGCAGCTGTGCGTTTGCAACCTCGATGCAGTGAGAAGGTTGAAAGAGATTCAGGAATCATCTCTTTCACTACCCGTCTGCTGGTACCAACCACACGTATTGGTTGCCTTATTGGTAAAGGGGGGTCTATCATAACTGACATGAGGAGGCTTACAAAAGCTAACATTCGCATCATTTCAAAGGAAAATCTTCCTAAGATTGCAAATGAAGATGATGAAATGGTGCAGATTTCAGGAGACCTTGATGTCGCCAAGGATGCTCTAGTGCATGTACTTACACGGTTGAGAGCAAATCTTTTTGATAGGGAGGGTGCTCTCTCTGCATTCCTTCCAGTTCTGCCATATCTCCCTGTTTCAGCAGATGGATCAGATGGCCTAAACTATGATGGTAGAGATGGTAAAAGACATGGACGTGGACATTCATATTCAAGTGGGTATGGAGGCTCAAGTGATTTAGCAGCTGGTGACGTCTATGGAAGCTATGGTGGTTCTCAGCTTGGAAGCAACAGTGCTTATGGGGCTTATGGAAGTTATTCTTTGGGACGGTCTAGTACTGCTGGGTTGTCGAGTCAGAGTGGTGTTTCTAGGAGGAGAAACCATGCTTACTAG

Predicted protein sequences of Glyma13g05520

Limit To All Plant Sequences

>Glyma13g05520.4   sequence type=predicted peptide   gene model=Glyma13g05520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGQRSGYGKRPHSQSDHDNGPNKRRNHGDDREQFVIDSEDTVYRYVCPGRKIGSVIGRGGEIVKQLRVETKAKIRIGETVPGCEERVVTIYGPSDETNAVEGGGNYVSPAQDALFKVHDRVVAEDFHGDQDDDGGQQVTAKLLVPSDQIGCVIGKGGSIVQNIRGETGAQIRILKDDHLPMCALSSDELVQITGDAAVVKKALYQIASRLHDNPSRSQHLLTSAVSGVYPAGGSLIGPGAGAPIVGIAPLVGSYGGYKGDTGDWPPRSMYSAPRDEASSKEFSVRLVCPTGNIGGVIGKGGMIINQIRQDSGATIKVDSSTIEGDECLIAISTKEFFEETFSPTIEAAVRLQPRCSEKVERDSGIISFTTRLLVPTTRIGCLIGKGGSIITDMRRLTKANIRIISKENLPKIANEDDEMVQISGDLDVAKDALVHVLTRLRANLFDREGALSAFLPVLPYLPVSADGSDGLNYDGRDGKRHGRGHSYSSGYGGSSDLAAGDVYGSYGGSQLGSNSAYGAYGSYSLGRSSTAGLSSQSGVSRRRNHAY*

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