Glyma13g05460 - SoyBase

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Report for Sequence Feature Glyma13g05460

Feature Type:	gene_model
Chromosome:	Gm13
Start:	5780126
stop:	5785061
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g05460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G01170	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L34e superfamily protein \| chr3:58043-58690 FORWARD LENGTH=215	SoyBase	E_val: 1.00E-80	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
PTHR10759	Panther	60S RIBOSOMAL PROTEIN L34	JGI		ISS
PTHR10759:SF2	Panther	STRUCTURAL CONSTITUENT OF RIBOSOME	JGI		ISS
UniRef100_B9T0T4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L34, putative n=1 Tax=Ricinus communis RepID=B9T0T4_RICCO	SoyBase	E_val: 4.00E-95	ISS
UniRef100_C6TI13	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TI13_SOYBN	SoyBase	E_val: 2.00E-177	ISS

Expression Patterns of Glyma13g05460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g05460

Paralog	Evidence	Comments
Glyma19g02700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g05460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g062600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g05460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g05460

Limit To All Plant Sequences

>Glyma13g05460.1   sequence type=CDS   gene model=Glyma13g05460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCTATTTCCATAGCTCAATCTCTCTCTGCAAGTCCGTTGATCAATCATCTTCCATGGCGAATTCAATATGTTCTGCTGATTTCGGTTCGAAATCGAGGCAAATCAATCACCTTCAGAAGAATCGGAGAACCCCTAGTTCTTCATCGTCATCGAATTCTCTTCAGATACCACCCTGTGATCGATCTCGATCGGCTATGGTTGATGTTGTGATGTTCATTGCTGTTGTTTGTGCCTGTGGCTTTTTGTTCTTCCCTTATGTAGAGTTTTTGGTGACAAAGTGTTACGAGGTTATTAAGGTTGTTGTGTTTTTGATTAAGGAGGAGGTTTCTGTGGCACCTTGGATCTATGTTTCCATAGGGTTGAGTGTTGTGTTTGCTGCATTGGCCACGTGGGGTGTGGTGGCTTGCACCACTAGGAAGTGTGGGAATCCCAATTGCAAGGGTCTGAGGAAGGCTGCTGAGTTTGACATTCAGTTGGAGACTGAGGATTGTGTGAAGAATTCGGCTTCTTCGTCGTCGAATGTGGCAAAAGATGGTGCTGGTGGAGTGAAGAAGGGGCTCTTTGAATTGCCTCGTGATCACCATAGGGAGCTGGAGGCTGAGCTCAAGAAGATGGCACCACCAAATGGAAGGGCTGTGCTCGTGCTGCGGGCGAGGTGTGGATGTTCTGTTGGTAGGTTAGAGGTTCCGGGACCAAGGAAGCATCTTCGAAAGATCAACAAGAAGTAG

Predicted protein sequences of Glyma13g05460

Limit To All Plant Sequences

>Glyma13g05460.1   sequence type=predicted peptide   gene model=Glyma13g05460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVYFHSSISLCKSVDQSSSMANSICSADFGSKSRQINHLQKNRRTPSSSSSSNSLQIPPCDRSRSAMVDVVMFIAVVCACGFLFFPYVEFLVTKCYEVIKVVVFLIKEEVSVAPWIYVSIGLSVVFAALATWGVVACTTRKCGNPNCKGLRKAAEFDIQLETEDCVKNSASSSSNVAKDGAGGVKKGLFELPRDHHRELEAELKKMAPPNGRAVLVLRARCGCSVGRLEVPGPRKHLRKINKK*

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