Report for Sequence Feature Glyma13g05380
Feature Type: gene_model
Chromosome: Gm13
Start: 5701882
stop: 5703917
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g05380
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G28917 AT
Annotation by Michelle Graham. TAIR10: mini zinc finger 2 | chr3:10925014-10925316 FORWARD LENGTH=100
SoyBase E_val: 6.00E-35 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
PF04770 PFAM
ZF-HD protein dimerisation region
JGI ISS
UniRef100_B9T6Z4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9T6Z4_RICCO
SoyBase E_val: 3.00E-40 ISS
UniRef100_C6SWB8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SWB8_SOYBN
SoyBase E_val: 8.00E-58 ISS
Expression Patterns of Glyma13g05380
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma13g05380
Paralog Evidence Comments
Glyma19g02610 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g05380 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g063100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g05380
Transcripts of Glyma13g05380
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g05380.2 sequence type=transcript gene model=Glyma13g05380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CATTTTTATACTCTAAAATTATATTTAATTTCTATATCAACCAAAACCTTCATTGGTTAACTCTTACATGATTGAAAAGAAGCTAGATACACTAAAGAGAAACATATATAGGTCATTAAAACTTATGAGTGGGTCCCACTTGTTAAAATTTATTGATAGAGAAGATGAACTTCATCTTTTATAAATACACACCCTAGGGTTAGGGCTCTGCATATCCATTGCAAGGTTATTTGAAGAATCTGAAAGGTACTAGCTAGCTAGCTAGTACTTCTACACTGTGAGGTAGCATCATGAGGAAGCGCCAAGTAGTTGTGAGAAGAGAGGAGCCTCAAAGGAGCGCTAGGACGGTGAAATACGGCGAGTGCCAGAAGAATCACGCCGCGAATGTGGGAGGGTATGCTGTTGATGGCTGCAGGGAGTTCATGGCGAGTGGCGCCACCGGAGAAGGAACAAGTGCTGCTCTCACTTGTGCCGCCTGTGGTTGCCACAGGAACTTCCACAAGAGACAGGAAACCGAAGTGGTGAGTGAGTGCTCCTCGCCTACCTCCAATGGAACTTAATCAGAGCTAGCTTCGTCATAATGTTTATACCTCAACAATTATGCTGCTACACTCCATATCATATCCCTTGTAATATATTTTGTGGAATTTGCTTTTGCTTGTTATTAATTAAGAATTGGGGTTTTAATTAATTAAGCATACTACTGAACTAGTATGAATGAATATTCTAGAATTGTTATATATAGTAATTCTAGAGTGGTAATGTATGGTGATGATTTTGAGGTTGATGTGTGTAAAGAGAAAAAGGGCAATCACAAGTTGTTTTTGTGATGATGAGTGTGCAAAGTTTTGACCATCTTCTCTTCTTACATGTTTGGTTTAATTAACTTGTTTTGAAGAAATAATTGCTTGTTTTTTTTGTAAAAAGAAAAATTAATTATTTCTGAGAAATAGTGTTTCCAAACATGTAAGTAATTACTCGGTTAAACTAGGCTTTTATTGTTGCTTTGTTTATTTATGAGCTTATGTATGTAAGTTGTGTTATGGATTTTGCTTTGTAGCTACACAATGTAGCAGTTGTGATCAGTTTGAAATTTGATGAGGAAAATTGGTATTGGTT
Coding sequences of Glyma13g05380
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g05380.1 sequence type=CDS gene model=Glyma13g05380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGGAAGCGCCAAGTAGTTGTGAGAAGAGAGGAGCCTCAAAGGAGCGCTAGGACGGTGAAATACGGCGAGTGCCAGAAGAATCACGCCGCGAATGTGGGAGGGTATGCTGTTGATGGCTGCAGGGAGTTCATGGCGAGTGGCGCCACCGGAGAAGGAACAAGTGCTGCTCTCACTTGTGCCGCCTGTGGTTGCCACAGGAACTTCCACAAGAGACAGGAAACCGAAGTGGTGAATCATATCATTTGA
>Glyma13g05380.2 sequence type=CDS gene model=Glyma13g05380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGGAAGCGCCAAGTAGTTGTGAGAAGAGAGGAGCCTCAAAGGAGCGCTAGGACGGTGAAATACGGCGAGTGCCAGAAGAATCACGCCGCGAATGTGGGAGGGTATGCTGTTGATGGCTGCAGGGAGTTCATGGCGAGTGGCGCCACCGGAGAAGGAACAAGTGCTGCTCTCACTTGTGCCGCCTGTGGTTGCCACAGGAACTTCCACAAGAGACAGGAAACCGAAGTGGTGAGTGAGTGCTCCTCGCCTACCTCCAATGGAACTTAA
Predicted protein sequences of Glyma13g05380
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g05380.1 sequence type=predicted peptide gene model=Glyma13g05380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRKRQVVVRREEPQRSARTVKYGECQKNHAANVGGYAVDGCREFMASGATGEGTSAALTCAACGCHRNFHKRQETEVVNHII*
>Glyma13g05380.2 sequence type=predicted peptide gene model=Glyma13g05380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRKRQVVVRREEPQRSARTVKYGECQKNHAANVGGYAVDGCREFMASGATGEGTSAALTCAACGCHRNFHKRQETEVVSECSSPTSNGT*